Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_019541.1
Length=45364
Score E
Sequences producing significant alignments: (Bits) Value
seq10695 206 8e-49
>seq10695
Length=46784
Score = 206 bits (228), Expect = 8e-49
Identities = 326/467 (70%), Gaps = 0/467 (0%)
Strand=Plus/Plus
Query 27794 GCTGGACACATGGCTGGTTTATTAACAGTAGGTTCAGCCATTTCAAAGATGGATACATAT 27853
|| ||| ||||||| || | | || || || |||| || || || ||| | |||
Sbjct 12786 GCCGGATACATGGCAGGCGTGGTCACTGTGGGCGCAGCAATCAACAAAATTGATGCTTAT 12845
Query 27854 ACTGGATTACAAAATCGCCTTAAGTTAGTCACTAACAATCAAGTTGAACTAAATAAAGCA 27913
||| || ||||| ||| | || | ||||| || || ||||| ||||| ||
Sbjct 12846 ACTAACTTGCAAAACCGCTTAAAACTTGTCACCAATTCGCAGCAAGAACTTAATAAGGCG 12905
Query 27914 ACGGAAGACACTTTCCGAATTGCTCAAAAAACCTATTCAGCATGGGATTCTGTTCTACAG 27973
| | | ||||| ||| | ||||| |||| ||| || |||||| | || ||||
Sbjct 12906 ATGAATGACACGTTCGGGATTGCACAAACAACACGCCAAGAATGGGAAACAGTAACACAG 12965
Query 27974 GTCTACCAGCGTTTTAGTGATAATGCCAAAACTTTAAACCTCACAATGGATGACACTGCT 28033
|| || ||||| || ||||| ||||| ||||| | |||||||||| | |||||
Sbjct 12966 GTTTATCAGCGATTCAGTGACAATGCAAAAACGCTCGGAATCACAATGGAGCAAACTGCA 13025
Query 28034 CGACTAACTGAAACAGTATCAAAAGCAGTTGCGATCAGTGGTGCAAGCGCAGAAGCTGCT 28093
||| |||||||| || || ||||| |||||| | ||||| | |||||| | ||
Sbjct 13026 AAACTTACTGAAACCGTGTCGAAAGCCGTTGCGGTATCGGGTGCTACAGCAGAATCAGCA 13085
Query 28094 GATGCAGCTTTAGTACAATTTGGGCAGGCTTTGGCAAGCGGTACATTACGTGGTGAAGAA 28153
| || || | || |||||||||||||| || || ||| |||||||| || ||||||
Sbjct 13086 AACGCCGCACTTGTTCAATTTGGGCAGGCATTAGCGTCCGGCACATTACGCGGCGAAGAA 13145
Query 28154 CTCAACTCAGTTATGGAACAAACACCAGCTCTAGCAAAGGCTATTGCTCAAGGCATGGGG 28213
|| ||||| || ||||| ||||| || || || ||||| |||||||| ||| |||||
Sbjct 13146 CTAAACTCCGTCATGGAGCAAACGCCTGCACTTGCAAAAGCTATTGCAACAGGTATGGGC 13205
Query 28214 ATCACCGTAGGAGAGTTGCGTTCAGTTGCGGCTGAAGGAAAAATTAC 28260
| || |||| | || || |||||||| || ||||| ||||| ||
Sbjct 13206 TTAACTATAGGCCAATTACGCTCAGTTGCCGCAGAAGGGAAAATCAC 13252
Score = 98.7 bits (108), Expect = 3e-16
Identities = 156/220 (71%), Gaps = 14/220 (6%)
Strand=Plus/Plus
Query 24511 TCAAAATGGTGTGAATACAAGGGGGTTGATGGCGAAGTACAGGCAGAGTTCAAAGTCCGT 24570
|| |||||||||||||| || | | |||||||||||| | || | ||||||| |||
Sbjct 11805 TCGAAATGGTGTGAATATAAAGACGCTGATGGCGAAGTTCTTGCCAAAATCAAAGTACGT 11864
Query 24571 GGTATCGCCTATAAACCTTTTCAGGTAGCAATTGAACGAGCCGGAAATCAGATTTCATCC 24630
|| || | ||||| |||| |||||| ||| | |||||||| ||| || || ||
Sbjct 11865 GGCATTTCGTATAAGCCTTATCAGGTCGCAGTAGAACGAGCGCAAAACCAAATCGCACAG 11924
Query 24631 AAAGGCTATGATGTGATGGTCA----AAGATGAAAATGCCAAGCTTTACCATGAATTGTT 24686
||||||| ||| | ||| || ||| | ||| | ||| || | |||||||||| |
Sbjct 11925 AAAGGCTTTGACG---TGGACACCGCAAG-CGCAAACGACAAACTATTCCATGAATTGCT 11980
Query 24687 AATGGATGCGTGTGCTGC---CCACTTAATTGAAGACTGG 24723
| | ||||| |||||| || || |||||||| |||
Sbjct 11981 ACTTGATGC---TGCTGCGTGTCATTTGATTGAAGATTGG 12017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145009659938476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |