Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq18134 293 2e-73 seq17788 125 5e-23 seq13045 111 1e-18 seq1697 111 1e-18 seq8176 105 4e-17 seq1648 102 5e-16 seq489 100 2e-15 seq10147 89.7 3e-12 seq4416 86.0 4e-11 >seq18134 Length=7618 Score = 293 bits (324), Expect = 2e-73 Identities = 396/547 (72%), Gaps = 6/547 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| |||||| | ||| | || |||| ||||| | Sbjct 5245 TTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAAGTTG 5186 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| |||||||| || || |||||| | || ||||||||||||||| | || || |||| Sbjct 5185 AAATTATTGCCAACGATCAGGGTAATCGTACCACACCATCATATGTTGCCTTCACCGAAA 5126 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || ||||| || ||| |||| | || || || ||||| || | Sbjct 5125 CCGAGCGTCTGATCGGTGATGCCGCCAAAAATCAGGTGGCCATGAACCCAGTTAACACCA 5066 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | |||||||| || | ||||||||||| || || || ||| | |||| ||||| || | Sbjct 5065 TATTTGATGCCAAGCGTTTGATTGGTCGCAAATTCGACGATTCAGCTGTGCAATCGGACA 5006 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAAT 474630 || || |||||||| |||| || || || | ||| || ||| | || ||| | Sbjct 5005 TGAAGCACTGGCCTTTCGAGGTTATCAACGTCGATGGCAAGCCAAAGATCCAAGTTTGCT 4946 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | ||| | ||| || | || || ||||||| || |||||||| | || Sbjct 4945 ACAAG--GATGAGAAGAAAGCCTTCTTCCCTGAGGAAATTTCATCTATGGTTTTGTCTAA 4888 Query 474691 AATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACTG 474749 ||||| | ||||| | || ||||| ||||| || || |||| || || |||| Sbjct 4887 GATGAAGGAGACCGCCGAAGCCTA-CTTGGGCAAGACCGTGACAAATGCTGTCATCACTG 4829 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 | || || || || || ||||| ||||||||||| ||||| ||||| || | ||||| | Sbjct 4828 TGCCCGCTTACTTCAACGATTCGCAACGTCAAGCGACTAAGGATGCTGGTACTATTGCTG 4769 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 || | |||||| | |||||||| || ||||| || || ||||| |||| |||||||||| Sbjct 4768 GTTTAAATGTTCTCCGTATTATCAACGAACCCACTGCCGCCGCTATTGCCTATGGTCTTG 4709 Query 474870 ATAAGAA 474876 | ||||| Sbjct 4708 ACAAGAA 4702 >seq17788 Length=7208 Score = 125 bits (138), Expect = 5e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||||||||||| || |||| |||||| | || || |||||||| || |||||||| Sbjct 2377 ATTATAATCAGAGAGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTG 2318 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||| |||||||||||||| ||||| |||||||| ||||||| ||| ||||| || Sbjct 2317 TTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTC 2258 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || ||||| ||||| || ||||| ||||| || Sbjct 2257 CGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTG 2201 >seq13045 Length=15672 Score = 111 bits (122), Expect = 1e-18 Identities = 222/326 (68%), Gaps = 10/326 (3%) Strand=Plus/Plus Query 297309 TCGTGTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAAT 297368 |||| |||| || || |||||||||||||| || ||||| ||||| | || ||| Sbjct 7744 TCGTATTACGCCAGTCTTTGATTGTTGGTTTGAGTCTGGTTCCATGCCCTTTGCGCAACA 7803 Query 297369 TCATTATCCTTTTGAAAATTCCGAAATTTTAGACACTTCACAAG--ATTATATTGCAGAT 297426 |||| || || || || ||| | || |||||| | ||| ||| ||| Sbjct 7804 GCATTTCCCATTCGAGAA---CGAGA----AGG-ACTTCATGAACAATTTCCCTGCTGAT 7855 Query 297427 TTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCT 297486 ||||| | || |||||||| || | || ||||| || || | | ||| |||| Sbjct 7856 TTTATTTCCGAGGGCATTGATCAGACTCGCGGCTGGTTCTACACGCTGCTTGTTATTTCA 7915 Query 297487 ACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCA 297546 ||| | ||| |||| | ||||||||||| | |||| | || ||||| || Sbjct 7916 ACAATACTCTTTGGCAAAGCGCCATTTAAAAATCTCATTGCAAGCGGTCTTGTTCTGGCT 7975 Query 297547 GCTGATGGACAAAAAATGTCAAAAAGTAAAGGTAATTATCCTGATCCAAATATTTTGATG 297606 ||||||| ||||| |||||||| || ||| ||||| |||||||| | || || || Sbjct 7976 TCTGATGGTCAAAAGATGTCAAAGAGCAAAAAGAATTACCCTGATCCTATGCTTGTGGTG 8035 Query 297607 GATAAATATGGTGCAGATACTTTACG 297632 ||||||||||||| ||| |||| || Sbjct 8036 CATAAATATGGTGCTGATGCTTTGCG 8061 >seq1697 Length=24975 Score = 111 bits (122), Expect = 1e-18 Identities = 237/347 (68%), Gaps = 8/347 (2%) Strand=Plus/Minus Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 |||| ||||| || | || || |||||||| || |||||| | | | ||| |||| Sbjct 13833 TTTTCGATGCAAAGCGTTTAATAGGTCGTAAATTCGATGATCCGAAAATTCAACAGGATA 13774 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AAT 474630 | |||||||| || || ||| | |||| ||| || || | || ||| ||| Sbjct 13773 TCAAGCATTGGCCATTCAAAGTGTTCAATGACAATGGCAAGCCGAAGATTGAAATTGAAT 13714 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 | | || ||| ||| | ||| | || || ||||| ||||||||||| | || Sbjct 13713 TTAAG--GGCGAACGTAAGCGTTTTGCGCCCGAGGAAATTAGCTCAATGGTTTTGACGAA 13656 Query 474691 AATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAAC-TGATGCAGTAATTACT 474748 |||| ||| || || || ||| |||| | ||| | |||||| || || ||| Sbjct 13655 AATGCGTGAAATTGCTGAAGTC-TAT-TTGGGCGGCAAGGTGCGTGATGCGGTCATCACT 13598 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || ||||| || || || || || || |||||||| || |||||| Sbjct 13597 GTGCCCGCCTACTTCAATGACTCACAGCGCCAGGCCACCAAAGATGCTGGCTCAATTGCT 13538 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACT 474855 ||||| ||||| || ||||| || ||||| |||||||||||| ||| Sbjct 13537 GGTCTCAATGTGTTGCGTATAATAAATGAGCCAACAGCAGCCNGACT 13491 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474767 GATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGT 474826 || || || || || || || |||||||| ||| |||||| ||||| ||||| || || Sbjct 13494 GACTCACAGCGCCAGGCCACCAAAGATGCTGGATCAATTGCTGGTCTCAATGTGTTGCGA 13435 Query 474827 ATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAA 474886 || || ||||| ||||||||||| || ||||| |||||||| ||||| ||| | | Sbjct 13434 ATAATAAATGAGCCAACAGCAGCTGCGCTTGCCTATGGTCTGGATAAAAATCTTAAAGGC 13375 Query 474887 GAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||| ||||| || ||||||||| ||| || Sbjct 13374 GAAAAGAATGTCTTGATCTTTGATCTTGGTGG 13343 >seq8176 Length=26989 Score = 105 bits (116), Expect = 4e-17 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 474688 CAAAATGAAACAAACCGCGAGCTCATAT-CTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 ||| |||||| |||| || || || | || ||| || |||||||| ||||| |||| Sbjct 15124 CAAGATGAAAAAAACGGC-AGAAGATTTTCTGGGAGAAACCGTAACTGAAGCAGTGATTA 15182 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 |||| |||||||| |||||||| | ||||| |||||||||||||| || || | |||| Sbjct 15183 CTGTACCAGCATACTTTAATGACGCACAACGCCAAGCAACTAAAGACGCAGGGCGTATTG 15242 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | || || | || || ||||| ||||| ||||| || || || | || | ||| Sbjct 15243 CTGGGCTGGAAGTCAAGCGCATTATCAATGAGCCAACCGCTGCGGCTTTGGCGTTTGGAT 15302 Query 474867 TTGATAA 474873 | ||||| Sbjct 15303 TGGATAA 15309 Score = 104 bits (114), Expect = 2e-16 Identities = 262/391 (67%), Gaps = 8/391 (2%) Strand=Plus/Plus Query 475881 TTGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAAT 475939 |||||| | ||||| ||||| ||| | ||| ||||||| | || || | ||||| || Sbjct 15935 TTGTTGGATGTAACGCCACTATCACTTGGTATTGAAACCTTGGGTGGAGTCATGACCAAA 15994 Query 475940 CTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCT 475999 | |||| || ||| || |||| ||| |||| | | | | || ||| | Sbjct 15995 ATGATTGGCAAAAACACAACTATTCCAACCAAACATGCGCAGACCTACTCGACTGCTGAA 16054 Query 476000 GATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGAT 476059 || ||||| | | || || || | | || |||| || ||| || || | | | | Sbjct 16055 GACAATCAGCCGTCCGTTACAATTCGCGTTTTCCAAGGCGAGAGAGAAATCGCAAGTGCT 16114 Query 476060 AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCT 476119 ||||| ||||| |||||||||||||| ||| |||| || || ||||| | || Sbjct 16115 AATAAGTTGCTTGGCGAATTTAATCTTGAAGGGATTGCTCCAGCGCCGCGAGGATTGCCG 16174 Query 476120 CAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGAT 476179 || |||||||| |||| |||||||| | ||||||||| | |||| | |||| ||| Sbjct 16175 CAGATTGAAGTATCTTTCGATATTGACTCTAATGGTATTTTGCATGTCAGTGCTAAGGAT 16234 Query 476180 AAATCTAGTAACAAGAGTAAA-AATATAACTATTACAAACAATC-GTGGTAGATTTACTG 476237 ||| || | || || ||| || || || |||| || ||| | |||| || ||| Sbjct 16235 AAAGGTACTGGTAA-AGAAAACAAAATTACCATTA-AAGCAAACTCTGGT---TTATCTG 16289 Query 476238 AAGAACAAATTCAACGTATGGTTGATGAAGC 476268 |||| | ||| | ||||||||| | || || Sbjct 16290 AAGATGAGATTGAGCGTATGGTTAAAGACGC 16320 >seq1648 Length=58106 Score = 102 bits (112), Expect = 5e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| |||||||| ||||| || || || |||||||| || ||||||||||| Sbjct 33373 GCAGTCGTTACAGTTCCAGCTTATTTCAACGACTCACAACGTCAGGCTACTAAAGATGCT 33314 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || || || |||||||||||| | || | || ||||| ||||| || || || ||| Sbjct 33313 GGTCAGATAGCTGGTCTTAATGTTCTTCGCGTCATCAATGAGCCAACCGCTGCTGCCCTT 33254 Query 474857 GCTTATGGTCTTGATAAGA 474875 || ||||| | || |||| Sbjct 33253 GCATATGGCATGGACAAGA 33235 >seq489 Length=77466 Score = 100 bits (110), Expect = 2e-15 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| ||||||||||| | ||| || || ||| |||| ||| || || || | || Sbjct 4399 ACGCAGACGGAGTACCAAATGCAGGGTCGACTC-CTTTTGAATG-TTGTAGTCGGAAAGT 4456 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | |||||| |||||||| || ||||| || ||||| ||||| || || ||||| Sbjct 4457 GTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATG 4516 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 || || ||||| || ||||| |||||| || || || |||| | | || | | Sbjct 4517 CCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCC 4576 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| |||| || |||||||||||||| || ||||| || || Sbjct 4577 AAGG-TAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTG 4617 >seq10147 Length=26039 Score = 89.7 bits (98), Expect = 3e-12 Identities = 191/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 357397 AATTTAGAACCAAAACCATTTTTACCACCCACTGTTTTCTTTTCGTTTTTATCATAATTA 357456 ||||| | |||| |||||||| ||||||| ||| ||||| | | | || || Sbjct 10963 AATTTGGCACCATAACCATTTCGACCACCCGTGACTTTTTTTTCATCATCGTTGTAGTTC 10904 Query 357457 GTTGATGTCAAAAGTTCTCCAAAAATCATAGATGGTACTAAAATTTTATGCTCTTTATGT 357516 | || ||||| || | |||||| ||||||| || || || || || |||||||| || Sbjct 10903 GACGAGGTCAATAGATGTCCAAAGATCATAGTCGGAACAAACATCTTCTGCTCTTTGTGC 10844 Query 357517 TCAACCACATCAATACCATCACCATTATTCCAGACAGTAATCTTACCTGTATCTTGTTCT 357576 | || ||||| | ||||||||||| || | |||| | | || | || Sbjct 10843 ATAGTAACTGGTATACCCTGGCCATTATTCCAAACCGAAATCATGTTCTTCTCCGGATCG 10784 Query 357577 ATATTAACTTTTATTGTATTACAT-GTC-GAACACCTATTATTATGATCTGCTGCGTTAA 357634 |||| || |||||| | ||| ||| ||| | ||| | | |||| |||||| || |||| Sbjct 10783 ATATCAATTTTTATGGCATT-CATAGTCTTATCACGT-TGTTTATTATCTGCGGCATTAA 10726 Query 357635 CTAATACTTCATCATAAATTTTATATAAACCAGGTACATA 357674 | | | |||||| | |||||||| | ||| || ||||| Sbjct 10725 CGAGGATTTCATCGAATATTTTATACAGACCGGGAACATA 10686 >seq4416 Length=2693 Score = 86.0 bits (94), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || || ||||| || | || || || || ||||| |||||||| || || || || || Sbjct 1014 GTGACGGATGCCGTGGTCACAGTGCCTGCCTATTTCAATGATTCACAGCGGCAGGCCACA 955 Query 474788 AAAGATGCGGGAAGA-------ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 ||||||||| || | ||||| || | ||||| | | || |||||||| || Sbjct 954 AAAGATGCGNGACGCTGGCGCCATTGCGGGCTTAAATGTGCTGAGAATCATTAATGAGCC 895 Query 474841 AACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||| || || ||| |||| ||||||||||| ||||| Sbjct 894 AACGGCCGCGGCAATTGCCTATGGTCTTGACAAGAA 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267343908547004