Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 163 1e-35
>seq1169
Length=8375
Score = 163 bits (180), Expect = 1e-35
Identities = 334/493 (68%), Gaps = 4/493 (1%)
Strand=Plus/Plus
Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974
|| || ||| ||| | |||||| | ||||||||||| | || ||||||||||| |
Sbjct 2048 ATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACG 2107
Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034
||||| |||||| ||||| ||| ||||||||||| ||||| || ||||| ||||
Sbjct 2108 AGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGC 2167
Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094
||||| || |||||||| |||||||| || || || || || |||||||||||
Sbjct 2168 ATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTAC 2227
Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTT 26154
|||| ||| | ||| |||||| | | |||||| || | |||| | || || ||
Sbjct 2228 ATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATT 2287
Query 26155 TGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACC 26214
|| | ||| | || | | | ||| ||| ||| ||||| ||||||||
Sbjct 2288 AGTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCCACC 2347
Query 26215 AGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATC 26274
|| ||||||| || ||||| | | || | | ||||| |||| ||| |||
Sbjct 2348 GGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAATC 2407
Query 26275 ACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAA 26334
|| |||| ||| | |||||| ||||||| ||||| | || | ||| | | | |||
Sbjct 2408 CGCTACCATTGTTAAAAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCAAA 2467
Query 26335 TAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCAA--AGCTGTATAAGTTTCAAGA 26392
|| || |||| ||||| || | || | ||| | || || | |||||||||| |
Sbjct 2468 CAAAGTAGGTGATGCATGCGTGAAGTAACGTTC-CGAAAGTAGAT-TATAAGTTTCTATT 2525
Query 26393 ACTTCATCGATAT 26405
|| |||| ||||
Sbjct 2526 GCTGCATCAATAT 2538
Score = 118 bits (130), Expect = 5e-22
Identities = 125/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074
||| |||||||| ||||| ||||| | ||| ||||||||| | |||||||| ||||
Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240
Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134
||||||||| | |||||||| ||||| ||||| |||||| ||||| | || |||||
Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300
Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179
||| | ||||| || ||||| | ||||||| | ||||||
Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATC 1345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252979946728475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |