Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1169 163 1e-35 >seq1169 Length=8375 Score = 163 bits (180), Expect = 1e-35 Identities = 334/493 (68%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974 || || ||| ||| | |||||| | ||||||||||| | || ||||||||||| | Sbjct 2048 ATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACG 2107 Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034 ||||| |||||| ||||| ||| ||||||||||| ||||| || ||||| |||| Sbjct 2108 AGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGC 2167 Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094 ||||| || |||||||| |||||||| || || || || || ||||||||||| Sbjct 2168 ATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTAC 2227 Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTT 26154 |||| ||| | ||| |||||| | | |||||| || | |||| | || || || Sbjct 2228 ATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATT 2287 Query 26155 TGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACC 26214 || | ||| | || | | | ||| ||| ||| ||||| |||||||| Sbjct 2288 AGTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCCACC 2347 Query 26215 AGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATC 26274 || ||||||| || ||||| | | || | | ||||| |||| ||| ||| Sbjct 2348 GGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAATC 2407 Query 26275 ACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAA 26334 || |||| ||| | |||||| ||||||| ||||| | || | ||| | | | ||| Sbjct 2408 CGCTACCATTGTTAAAAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCAAA 2467 Query 26335 TAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCAA--AGCTGTATAAGTTTCAAGA 26392 || || |||| ||||| || | || | ||| | || || | |||||||||| | Sbjct 2468 CAAAGTAGGTGATGCATGCGTGAAGTAACGTTC-CGAAAGTAGAT-TATAAGTTTCTATT 2525 Query 26393 ACTTCATCGATAT 26405 || |||| |||| Sbjct 2526 GCTGCATCAATAT 2538 Score = 118 bits (130), Expect = 5e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 ||| |||||||| ||||| ||||| | ||| ||||||||| | |||||||| |||| Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 ||||||||| | |||||||| ||||| ||||| |||||| ||||| | || ||||| Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 ||| | ||||| || ||||| | ||||||| | |||||| Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATC 1345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252979946728475