Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq7139 150 2e-31 seq6538 95.1 2e-14 >seq7139 Length=3176 Score = 150 bits (166), Expect = 2e-31 Identities = 331/491 (67%), Gaps = 19/491 (4%) Strand=Plus/Minus Query 47583 CCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCTCTACTTCAGCAGG 47642 ||||| ||| | | || || || || |||||||| | || || || || | ||| Sbjct 1790 CCAACTCAACTCTCGTTTGGCTTTCGAAGCATCACCAAGTAGTAGATCGACCTCCGTAGG 1731 Query 47643 ACGGAAATATTTAGAGTCAATTCTGATAACCGTTTTACCA---TCAGAATCAATACCAAC 47699 || |||||||||| | ||||| || ||| | ||| || ||||||||||| Sbjct 1730 TCGAAAATATTTAGGATTAATTCGTATGCGTGTTATTCCAGTTTCCAGCTCAATACCAAC 1671 Query 47700 TTCATCAAGACCAGAACCTTCCCATCTAATATTCAT----ATCAAAATAAGGTGCAGATT 47755 |||||||| ||| | || ||| ||| || | | |||| | | || | || Sbjct 1670 TTCATCAATCCCATGATTTTTCCAAACAAT-TTGACGACCAACAAATTTAAACGCCGCTT 1612 Query 47756 CCTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTT 47815 || ||||||| ||| || | | | || || ||||| ||| |||| ||| | Sbjct 1611 CC---ACAAACTCACGCACGCTGTGTGTTTCACCAGTAGCAATGACATAATCCGAAGGAT 1555 Query 47816 CTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCAC 47875 | || || |||||||| | ||||||||| |||||||| || || || ||||| |||| Sbjct 1554 CATCCTGCTGAAGCATCATCCACATAGCTTCGACATAGTCAGCAGCGTGACCCCAATCAC 1495 Query 47876 GAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT- 47934 | || || ||||| || | | ||| | ||| ||| | |||||| || |||| Sbjct 1494 GTTTTGAGTCCAGATTCCCCAACTCAAAATAATCTAGCTGA--TTCAGAAATA--TTTTG 1439 Query 47935 ---AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGA 47991 | || | || |||||||| || |||||| |||||||||| | ||| ||||| ||| Sbjct 1438 GCGACTGAACGAGTGATCTTACGTGTAACAAAATTTTCACCACGACGTGGTGATTCGTGA 1379 Query 47992 TTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATC 48051 ||||||||||| || | || ||| |||| | || | ||||||||| || ||| ||| Sbjct 1378 TTAAAAAGAATGCCGTTGCAAGCAAACATACTATAAGCTTCACGATAATTAACTACAATC 1319 Query 48052 CAGTACCCATA 48062 ||| | ||||| Sbjct 1318 CAGAAGCCATA 1308 >seq6538 Length=3451 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||| ||| ||||||| ||||| |||| | ||||| |||||||||||| ||||| Sbjct 3252 TGGAGAATAAGGGAGTCGAACCCTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAAC 3193 Query 53800 TGAGCTAATTCCCC 53813 |||||||||||||| Sbjct 3192 TGAGCTAATTCCCC 3179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665332410344360