Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11998 91.5 2e-13 >seq11998 Length=46925 Score = 91.5 bits (100), Expect = 2e-13 Identities = 251/380 (66%), Gaps = 21/380 (6%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || || || || | || | |||| || |||||| |||| || || || Sbjct 37075 CCAGGGACAGGGAAAACACTGTTGGCAAAATCCATTGCTGGTGAAGCAAAGGTTCCGTTT 37134 Query 175375 ATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || ||| | ||| | | |||||||||| ||||||||||| || || || | | || Sbjct 37135 TTC-AGTATTTCTGGCTCTGACTTTGTGGAAATGTTTGTTGGCGTTGGAGCGGCACGTGT 37193 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || || | ||||| | ||| ||||| || || ||| | || ||||||||||| Sbjct 37194 ACGTGACATGTTTGAGAACGCTAAAAAAAATGCTCCCTGCATTATTTTTATTGATGAGAT 37253 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGC------TGGTGGTATGCCAGCAAATGACGAGAG 175547 ||| || || || ||||| | || ||||||| | ||||||||| | Sbjct 37254 TGACGCCGTAGGGCGCCAACGTGGTGCAGGACATGGTGGT------GGTAATGACGAGCG 37307 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATGAGACTGG 175604 || |||||| | || ||| | | || |||||||| ||||| |||| | || Sbjct 37308 TGAGCAAACATTGAACCAAATGTTAGTGGAAATGGATGGTTTTGAAACCAATTTGGGTGT 37367 Query 175605 CATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCC 175664 || || | ||||||| ||||| || ||||| | ||| ||| | | ||||| Sbjct 37368 AATAGTCG---TTGCGGCAACTAACCGTCCAGATATTTTGGATAGCGCTTTGTTGCGCCC 37424 Query 175665 GGGTCGTTTTGATCG-CAAG 175683 ||| || |||||||| |||| Sbjct 37425 GGGACGATTTGATCGTCAAG 37444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596424387502240