Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4404 93.3 6e-14 seq17788 91.5 2e-13 >seq4404 Length=3800 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/165 (74%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 18156 AACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTA 18215 |||| ||||| ||| ||||||||||||||| | || |||||||| || || |||| Sbjct 2738 AACA-GCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTA 2680 Query 18216 ACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGA 18275 | || ||||| | || | ||| || |||||||| || || || ||||| | | ||||| Sbjct 2679 AACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGA 2620 Query 18276 ATATACCCTC-AACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 |||| ||||| | |||| || || || || | ||| ||| | ||| Sbjct 2619 ATATGCCCTCGACCGCA-GCAAAGGCAATAATTCTCTCACCGAAA 2576 >seq17788 Length=7208 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| ||||||| | || || || || || || | || |||||| | Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| || ||| || || || || |||||||| || |||||||| Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | || | ||| || || ||| | |||||| |||| | || |||||| Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTAT 2374 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||||| ||||| |||| | ||||| || || Sbjct 2375 AATATCCAGAAAGAATCGACTTTGCATTTGGTTTT 2409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731693853206800