Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 93.3 6e-14
seq17788 91.5 2e-13
>seq4404
Length=3800
Score = 93.3 bits (102), Expect = 6e-14
Identities = 122/165 (74%), Gaps = 3/165 (2%)
Strand=Plus/Minus
Query 18156 AACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTA 18215
|||| ||||| ||| ||||||||||||||| | || |||||||| || || ||||
Sbjct 2738 AACA-GCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTA 2680
Query 18216 ACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGA 18275
| || ||||| | || | ||| || |||||||| || || || ||||| | | |||||
Sbjct 2679 AACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGA 2620
Query 18276 ATATACCCTC-AACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319
|||| ||||| | |||| || || || || | ||| ||| | |||
Sbjct 2619 ATATGCCCTCGACCGCA-GCAAAGGCAATAATTCTCTCACCGAAA 2576
>seq17788
Length=7208
Score = 91.5 bits (100), Expect = 2e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| || ||| ||||||| | || || || || || || | || |||||| |
Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| ||| || ||| || || || || |||||||| || ||||||||
Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | | || | ||| || || ||| | |||||| |||| | || ||||||
Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTAT 2374
Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
||||| ||||| |||| | ||||| || ||
Sbjct 2375 AATATCCAGAAAGAATCGACTTTGCATTTGGTTTT 2409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731693853206800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |