Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq17788 163 6e-35 seq489 114 3e-20 >seq17788 Length=7208 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||| || || || ||||| ||||| | ||||| ||||||||||||||| Sbjct 2424 CCACCACGAAGGCGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAG 2365 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| |||| ||||| ||||| ||||||||||||| | |||||||| || || Sbjct 2364 AGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGA 2305 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| || || || || ||| ||||| |||| || || | ||| || Sbjct 2304 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACC 2245 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| ||||| || | ||||||| ||| |||||||| || Sbjct 2244 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCATGTT 2195 >seq489 Length=77466 Score = 114 bits (126), Expect = 3e-20 Identities = 172/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATA 192357 ||| |||||||||||| | ||||| | ||| ||||| | || | || |||| || || Sbjct 4383 GTTCAATAATACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGA-ATG 4441 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || || || | ||| ||| |||| |||| ||| || || |||||||| | | |||| Sbjct 4442 TTGTAGTCGGAAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGT 4501 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || || || || || || ||||| || || || ||| || ||||| || | || Sbjct 4502 TGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCA 4561 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || || || | |||||||| ||||| || | ||||| | |||||||||||| Sbjct 4562 GAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATT 4621 Query 192538 TT 192539 || Sbjct 4622 TT 4623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984234374393550