Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq17788 134 2e-26 seq489 102 1e-16 >seq17788 Length=7208 Score = 134 bits (148), Expect = 2e-26 Identities = 180/249 (72%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| || ||||| | ||| || || || ||||| ||||| | ||||| Sbjct 2443 CTTCTTACGTTTCTTAGCTCCACCACGAAGGCGCAAAACCAAATGCAAAGTCGATTCTTT 2384 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 ||||||||||| || | | ||| | || ||||| ||||| |||||||| |||| Sbjct 2383 CTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAAGATTAG 2324 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 | ||||| || || || ||||||||||| || || || || ||| ||||| || Sbjct 2323 ACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGAT 2264 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 ||| || || | ||| || || ||||| ||||| ||||| || | ||||||| || || Sbjct 2263 AGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACAAAAAT 2204 Query 172064 CTGCATTTT 172072 |||||| || Sbjct 2203 CTGCATGTT 2195 >seq489 Length=77466 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||| | || || | ||| ||||| | || | ||| || ||| || || Sbjct 4388 ATAATACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAG 4447 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | | ||| | || |||| ||| || || ||||| || | | ||||||||| Sbjct 4448 TCGGAAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCT 4507 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || ||||| || || || ||| || ||||| || || || || | Sbjct 4508 GGGGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGC 4567 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || | |||||||| ||||| || | ||||| | ||||||||||||||| Sbjct 4568 TCAACCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904915678583400