Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq12641 336 1e-87 >seq12641 Length=70532 Score = 336 bits (372), Expect = 1e-87 Identities = 647/946 (68%), Gaps = 16/946 (2%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 || || |||||||| ||| | ||||| || || | || |||||||| || || || Sbjct 61600 GCGATTAACTGGAATCGCATTGAAGACGAAAAAGACTTAGAAGTCTGGAATCGTTTAACG 61659 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 || || |||||||| ||||| | || | || || || || || | |||| ||| Sbjct 61660 TCAAATTTTTGGCTGCCGGAGAAAGTGCCACTTTCAAATGATATTCCATCTTGGGCAACG 61719 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 || |||| | ||||||||| || || || || || || || || ||||| | || || Sbjct 61720 CTAACGGCGCAAGAGCAAGAGCTGACCATTCGTGTGTTTACAGGTTTGACGCTACTTGAT 61779 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505 ||| | ||| || |||||| || | |||| || || || | ||||| ||||| Sbjct 61780 ACGGTACAGAATGTGGTAGGTGCTTTGTGTTTGATTCCAGATGCTGTGACGCCACACGAA 61839 Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565 ||| |||| || || || ||| | || ||||| |||| |||||||| || ||||| Sbjct 61840 GAGTCGGTTTATACCAATATCTCTTTTATGGAAGCGGTACACGCGAAAAGTTACAGTTCA 61899 Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625 || || || || || || | ||||| | || | || || |||||| | || Sbjct 61900 ATTTTTTCTACTCTATGTCAGATGAAGGATGTGGATGAAGCATTTCGCTGGA--GCATAG 61957 Query 59626 AATCCGAA--CCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATC 59683 || |||| ||||||| |||||| |||| || ||| | || | || || || | Sbjct 61958 AAAACGAATTCCTGCAAAACAAGGCAAAGATTGTATTGGGGCATTATCGTGGGGATGACC 62017 Query 59684 CGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCT 59743 | | | ||| ||||| ||| || | ||| || | ||||| || ||||| | Sbjct 62018 CTTTAATGCGTAAGGTTGCCAGCGTTTTCTTAGAGTCATTTTTATTCTATTCTGGCTTTT 62077 Query 59744 ACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGC 59803 | |||| ||||||||| |||||| | || |||| || ||||| ||| | ||| | Sbjct 62078 ATTTGCCAATGTACTGGAGTAGTCGAGCAAAATTGACTAATACGGCGGACTTAATCAGAT 62137 Query 59804 TCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCC 59863 | || |||||||| || ||||||||||| || ||||| || || || || |||| ||| Sbjct 62138 TGATTATTCGTGATGAAGCGGTGCACGGTTATTACATTGGTTATAAATTTCAGC-AAGCC 62196 Query 59864 TGGAGACTCAGAACGAGGC----TCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTG 59919 | | | | | | | | || || || || ||| |||| ||||| | || | || Sbjct 62197 T--ACAAT-AAAGCCACGCCTAGTCACCAAGAAGAGGTGAAAAACTACGCTTATGAATTG 62253 Query 59920 CTACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGA 59979 || | || ||||| || ||||| | |||||||| ||||| | ||||||| || || Sbjct 62254 CTTCATGATTTGTATGATAACGAAGTCAAGTACACGGAGGATTTATACGACGCTGTTGGC 62313 Query 59980 CTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTC 60039 ||| || ||||| |||| |||| ||| |||||||||||||||||| | |||||| | Sbjct 62314 TGGACCGAAGATGTAAAGAAGTTCTTGCACTACAACGCCAACAAGGCTTTAATGAATTTG 62373 Query 60040 GGCTACGAGGCGCTGTTCCC--GCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGG 60097 || | || || || || || || | || || || |||||| |||| ||||| |||| Sbjct 62374 GGTTTTGAAGCACTCTTTCCTAGCTCTAC--TACGGATGTGAATCCGGCAATCTTAGCGG 62431 Query 60098 CACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATG 60157 | || || || ||| ||| || || || || ||||||||||| |||||| | |||| Sbjct 62432 CCCTATCGCCAAGCGCGGATGAAAATCATGATTTCTTCTCGGGTTCTGGCTCGTCATATG 62491 Query 60158 TGATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCTA 60203 | ||||| || ||||| | ||| | ||| ||||| |||||||| || Sbjct 62492 TCATTGGTAAAGCTGAAGCTACAGCAGATGAGGACTGGGACTTTTA 62537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258869748586548