Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3279 134 4e-26 seq1169 114 4e-20 seq2661 100 8e-16 seq4662 91.5 4e-13 >seq3279 Length=31337 Score = 134 bits (148), Expect = 4e-26 Identities = 215/303 (71%), Gaps = 12/303 (4%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| | |||||| ||||||| | ||||| |||||| ||| || |||||||| Sbjct 3187 ATTACGTACGGTACCATCATAATTGACCATAACAGACTCCATAGCCTTTATCAAACGACG 3128 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||||||| ||| || ||||| ||||| ||||| || ||||| |||||||||| Sbjct 3127 CTGAATATAACCGGTTTCAGCAGTTTTCACAGCAGTATCGATAAGACCTTCACGACCACC 3068 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGT---AGCCCCCCAATAAAGGAGCTCTCAAC 302714 |||||| |||| ||||| ||| | | || || || ||| | | || | ||||| Sbjct 3067 CATAGCGTGGA--AATAG-AATTCAGATGGTGTCAGGCCAGCAAGATATGAATTTTCAAC 3011 Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||||||| | ||| || || |||| || ||| | || || ||||| || | || Sbjct 3010 GAAACCACGTGACTCAGGACCGTAATCATC---TTTGATGAAATGCGGCAGTGTACGCTT 2954 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 | || || || |||||||| || ||||||||||| || |||| || | ||| | Sbjct 2953 ACGGAAACCATACGGTATACGCTTGCCTTCAACGTTCTGTTGACCCACACAAGCAATAAC 2894 Query 302832 CTG 302834 ||| Sbjct 2893 CTG 2891 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| | ||| || ||||| | |||||||| ||| || | ||||||||||| Sbjct 3924 ATTTCTTTGAGACGTGGCACACCGAGTGTTACGTT---CTTTGATGATACACCAGCAAAA 3868 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 |||||||||||||| || | ||||||| || || || | ||| || || || | | | Sbjct 3867 TGGAAAGTATTCAGTGTCATCTGAGTAGCAGGTTCGCCCAAACTCTGGGCAGCTAACGCA 3808 Query 301936 CCAACCATTTCTCCTGG 301952 ||||||||||| || || Sbjct 3807 CCAACCATTTCACCGGG 3791 >seq1169 Length=8375 Score = 114 bits (126), Expect = 4e-20 Identities = 717/1133 (63%), Gaps = 25/1133 (2%) Strand=Plus/Plus Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465 || || || |||||||| ||||| || | || ||||| || | || | | | | | Sbjct 1554 TCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAGTTAGACTTTCGAGCC 1613 Query 155466 TTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATAC 155521 | |||| || ||| |||| | ||||| || ||||||| |||| || || | | Sbjct 1614 T-CTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTATT-- 1670 Query 155522 CTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACC 155581 || ||||| || ||| || | | ||| || |||| ||| ||||||||| Sbjct 1671 -TTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGACACAAACATATT 1729 Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACA 155639 | |||| || |||| ||| ||||||||| | || | | || || | ||||||||| Sbjct 1730 TAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATC-TGGT-GCAGAATATTCTACA 1787 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 || || ||| | ||| | || |||||||| | ||| | ||||| ||| || Sbjct 1788 ATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTA 1847 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 ||||| | ||| || | | || ||||| || || || || | || || || | || Sbjct 1848 TTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATA 1907 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTG-CTTGTTGTATCTGCCTTCCGACTCATATTT 155818 | ||| || | || ||||||| || ||| | ||||| |||||||| Sbjct 1908 GAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCG-CGACCTTCTTGTTCATATTT 1966 Query 155819 CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGG 155878 ||| | | || | || ||||| || |||| || |||||||| |||| || Sbjct 1967 TTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGG 2026 Query 155879 GCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCA 155938 || | || ||||| | || | ||| || | |||||| | || ||| Sbjct 2027 ACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCA 2086 Query 155939 AATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCT 155997 || ||| || || | || | || || || || || | || ||| || ||| | Sbjct 2087 AAGAGCGTAAAATAAATCACGAGCTCTGTGT-TCTTCCTTTCCAGTATTTTTTTTTAGAT 2145 Query 155998 CTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC 156057 | ||||| || ||| || | ||| ||||| | ||| |||||||| ||| || Sbjct 2146 CCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCC 2205 Query 156058 TCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA 156114 |||| ||||| ||||||||||| || || ||||| || || | ||||| || | Sbjct 2206 TCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCA 2265 Query 156115 TAATACCATTGGAAGTGCCATTGGTTCCGCGAATATG-CGAACCAGATGAGCGAACATTA 156173 || ||||| || || ||||| ||||| |||| || | ||| | |||| | Sbjct 2266 CAAGTCCATTCGATGTACCATTAGTTCC-CGAAATTGAAGTACCCTTAGCACGAATGCAA 2324 Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233 |||| || || || || ||||| | |||| || || || |||| | ||||| Sbjct 2325 TGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTCTACAGAT 2384 Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293 || ||||| ||||| |||||||| || |||||| || ||| | || ||| || ||| Sbjct 2385 TTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAAAAGAAAACATGAAGATAGTTGC 2444 Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGAC 156353 || || ||| |||| || | ||||||| |||||| | || || | || Sbjct 2445 GGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAACGTTCCGAA 2504 Query 156354 ATATAATCGTATGTCTCCTTAAT-CTTC-TCAAGATTAGACCCGTGAATACAGATAGAGA 156411 | || || || || || | || | |||| || ||||| |||| || | | Sbjct 2505 AGTAGATTATAAGTTTC--TATTGCTGCATCAATATCCTCACCGTGTATACCAATCGCAA 2562 Query 156412 CCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATG 156471 | | ||| |||| || ||||| | ||| | ||| ||| | ||| | | || | Sbjct 2563 CACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACG 2622 Query 156472 CGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAA 156524 ||||||| ||||||||| || ||||| | | | ||||||||||| |||| Sbjct 2623 ATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTAA 2675 >seq2661 Length=88100 Score = 100 bits (110), Expect = 8e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||||||||| ||||||||| ||||| |||||||||||||| |||||||| ||| Sbjct 40864 GCACCGTGTGAAATTTGACAATCACGTTCCATCTCACCGAAACGAAGGCCACCATCACGA 40805 Query 251545 GCCCTACCCTCGGCAGGCTGACG 251567 ||||||||||| |||||| || Sbjct 40804 GCCCTACCCTCCATAGGCTGTCG 40782 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| ||||| || || ||||||||||| || ||||| ||| || | Sbjct 40445 CGATTGTCATACGAGATGGAATGGCGTGAGGATTGATGATAATATCGGGCGCCAGACCTT 40386 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCG 251961 || |||||||||||||||| || | || || | || ||| || || || ||| Sbjct 40385 CACATGTGAAGGGCATATCCTCTT-GACGGTACTGAATACCGCAAGTACCTTTCTGACCG 40327 Query 251962 TGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTA 252021 ||||| || ||||| |||||||| || || ||| ||| | |||| |||| Sbjct 40326 TGACGTGAGGCAAACTTGTCACCAATCTGTGGTATACGTACAGAACGCACACGAATCTTA 40267 Query 252022 CAGAAGTTGTAACCATCACCGTT 252044 ||||| ||||| || |||| ||| Sbjct 40266 CAGAACTTGTATCCTTCACTGTT 40244 >seq4662 Length=12946 Score = 91.5 bits (100), Expect = 4e-13 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 |||| || | |||||| || ||||| ||||| || | || || | ||| |||||||| Sbjct 6415 TGAAAAAAGGGTACATTCGCCTCGCCAGCTACAGCGCGGGCGAGCAATGTTTTACCTGTG 6474 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT---ATAT 289272 || || || || | | || ||| || || |||| || | || || | || | || Sbjct 6475 CCGGGGGGACCAACAAGTAAAACACCTTTCGGTAACTTGCCACC--CA-AGTTGGAAAAT 6531 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 ||||| || |||||| ||||| |||| ||||| ||||| | ||||| ||||||||| Sbjct 6532 TTCTCTGGATTCTTTAGGAATTCAACAACTTCCTTCAGTTCTTGCTTTGCTTCATCACAT 6591 Query 289333 CCTGCTACATCAGCAAAAGTAATATTAATATC 289364 ||| ||||| |||| || | || ||| || Sbjct 6592 CCTTTGACATCGTCAAATGTTACATGAATGTC 6623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471450384728401