Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2385 114 2e-19 seq1461 95.1 1e-13 >seq2385 Length=11938 Score = 114 bits (126), Expect = 2e-19 Identities = 187/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 1852373 TGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGAT-GTGCTGGAG 1852431 || || |||||||| |||||||| || ||| ||||| || || | || | || Sbjct 11577 TGATATTCGGTGCCCTTCACAAACTTAAGCTTATCCAAAGGCACACCAATAGAGC-GCAG 11635 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 ||| | |||||| | |||||| | || || |||||| || ||| |||| Sbjct 11636 CATTGACTTGATCACCGCCTCGTAGTACTGGGTGCGTAGTTCGAGGAGTGACCAAGGCGC 11695 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGC 1852551 ||| ||| || | | |||||||| ||||||||||| || | ||| ||||||||| Sbjct 11696 CTTCATGTTATCTAAATAGGCGTGCAAATCGGCAAAGAGTATTGTCACCTCACAGCCGGC 11755 Query 1852552 CTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGT 1852611 || ||| |||||||| | || | ||||||||||||||| | | || || ||||| || Sbjct 11756 CTTGAGGAAGTCGGCAATCTTCGACATGGGCACAAAGTAGGCGACATGTGGTTTGCCTGT 11815 Query 1852612 CGGCGCCGTGCCCCAATATATGATCAG 1852638 || ||| |||||||| || || |||| Sbjct 11816 CGTCGCTGTGCCCCAGTAGATTTTCAG 11842 >seq1461 Length=74684 Score = 95.1 bits (104), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || ||||| || || | ||||| || || | || || || || Sbjct 73227 AGAAGCGTACTGACGATATTTCATCATGGGATGCTGATTTCCTGAAAGTTGACCAAGGCA 73168 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||| |||| | || |||||||| | ||||| ||| ||| | ||| || Sbjct 73167 CACTTTTCGAGCTGATTTTGGCTGCCAACTATTTGGACATAAAGGGTCTTTTGGATGTTA 73108 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| ||||||||||||||||||| ||||| | || |||||||| || || || | Sbjct 73107 CTTGCAAAACTGTGGCCAACATGATCAAAGGCAAAACACCGGAGGAGATACGTAAAACAT 73048 Query 1592286 TTAACATCAA 1592295 |||||||||| Sbjct 73047 TTAACATCAA 73038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105541154427941