Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1169 206 2e-48 seq17788 152 5e-32 seq489 120 3e-22 >seq1169 Length=8375 Score = 206 bits (228), Expect = 2e-48 Identities = 1133/1791 (63%), Gaps = 51/1791 (3%) Strand=Plus/Plus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| ||||||||||| | ||| |||| || || || || || | | |||||||||||| Sbjct 821 TTTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCC 880 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 ||||| | || || ||| | || | |||||| ||||| | | | ||| | || Sbjct 881 AGTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGG 940 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | | ||| || || || || || || || |||||||| |||| ||| || Sbjct 941 TTCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGC 1000 Query 138333 CATGTTAATTAAATTTTTACTTTTCA----TCTCCCACACGGTCTTGTATAGATCACGAA 138388 ||| || ||| || | ||| || ||||||| || || || |||| || | | Sbjct 1001 CATTTTTATTG----TTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGA 1056 Query 138389 TATGTCGCGGTATTGTTGCAATATTTTGAAT-GCTCC-CGT-TGGCCGCAATGATGCGAT 138445 || | || |||||| |||||| |||||| | || || | | | | || | || Sbjct 1057 CATCTTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATT---AT 1113 Query 138446 TTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTA 138505 || |||| ||||| | ||| || ||| | | || || || | ||| ||| | Sbjct 1114 TTTTCATATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAA 1173 Query 138506 TGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAA 138565 || ||||| || || | || || | | ||| || || ||| | || |||| Sbjct 1174 CAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAA 1233 Query 138566 ACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAA 138625 | ||||| || ||||||| || ||||| || | || || ||||| || || | | Sbjct 1234 ATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGA 1293 Query 138626 GAGAATTCCGTAAACCGTGAAGCTTGATTCGTT--CCTTGAGCGACGACCAGTCCCACAA 138683 | ||||| | || || | | |||| || | | || | | | ||| |||||||| Sbjct 1294 GGGAATTTCTTACTCCAT-ACTTTTGAATCTTAAGCTTTAATTGTTG-CCAATCCCACAA 1351 Query 138684 ATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCC 138743 || | |||||||| |||||| || || |||| ||||| ||| || || || Sbjct 1352 ATTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCC 1411 Query 138744 TTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACC 138803 || |||| || || |||| ||| || |||| || || || || | | || Sbjct 1412 CTCATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACT 1471 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 || || || ||||| ||| || ||||| | | ||| || |||| || || || Sbjct 1472 GTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGG 1531 Query 138864 CATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATG 138923 || | | | | || || || | || || ||||| | || | ||| ||||| Sbjct 1532 ATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATG 1591 Query 138924 GCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTT 138983 | || || ||| | || ||| | ||||||||| || | || || ||||| || Sbjct 1592 TCTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATT 1651 Query 138984 TAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCC 139043 || |||||| || | || || | |||||| ||| ||||| ||| | Sbjct 1652 TAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTT----- 1706 Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103 || || ||| ||| ||||| | || | |||||| || | ||||| ||||| Sbjct 1707 -TTTTC--CGAGGAC----ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGC 1759 Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 | ||| || || | ||||| |||||||| | || |||||||| || || || || Sbjct 1760 AATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGT 1819 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 || | ||||||||| |||||||||| ||||| | |||||| | | |||||| || || Sbjct 1820 GCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGT 1879 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAACAAGTCCCTAGCTTGTATTT--- 139279 ||||||||| ||||| | || || || ||| || || | |||| |||| Sbjct 1880 GCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATTGT-GCTTTAATTTTTC 1938 Query 139280 GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCG 139338 || || | ||| | | || || ||||| || | | || || ||| ||||| Sbjct 1939 TACTTGCGCGACCTTCTT---GTTCATATTTTTCATATAACTTTTCAAACTCG-TCACCC 1994 Query 139339 TAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCC 139398 | | ||| ||| | | || || | ||||||||| || ||||| | | | || Sbjct 1995 CAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTCTCGATCTTCC 2054 Query 139399 TTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTC 139458 | || || |||| || || || |||||||| | |||| | | ||||| || || | Sbjct 2055 TCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTG 2114 Query 139459 TTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCAT 139518 | |||||| || | || ||| | | | ||| || |||| ||| || ||||| Sbjct 2115 TGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAA 2174 Query 139519 GGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCA---CCTTGATCGACGTGTCGT 139575 || || | ||| || || | ||| || || || ||| |||||||| || | |||| Sbjct 2175 GGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGT 2234 Query 139576 ACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTA 139635 | ||||||| || || | | ||| ||| | || || ||| ||| || || || | Sbjct 2235 GCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTC-C 2293 Query 139636 CGGA--TG--GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCC 139691 || | || | || || ||| || | | ||| ||||| || || ||||| ||| | Sbjct 2294 CGAAATTGAAGTACCCTT---AGCACGAATGCAATGAACATTTATACCTATTCCACCGGC 2350 Query 139692 AAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTC 139751 | |||| ||||| | | || | || | | | || ||| ||| || | Sbjct 2351 AGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAATCCGC 2410 Query 139752 CTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAG 139811 ||| || | ||||| ||||| || |||||||| | || || | || ||||||| Sbjct 2411 TACCATTGTTAAAAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCAAACAA 2470 Query 139812 AGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCT 139871 |||||| || |||||||| ||| ||| | | | || ||||| || || Sbjct 2471 AGTAGGTGATGCATGCGTGAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATTGCTGC 2530 Query 139872 CACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 |||||||| ||||| ||||| | | || ||||| | ||| ||||| Sbjct 2531 ATCAATATCCTCACCGTGTATACCAATCGCAACACGCATTAACATGTGTTG 2581 >seq17788 Length=7208 Score = 152 bits (168), Expect = 5e-32 Identities = 166/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || ||||| || || || || || || ||| | | Sbjct 2198 ATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCG 2257 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| || |||||||||||||| ||||| |||||| Sbjct 2258 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 2317 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 |||||| | |||||||| || |||||| |||| ||| |||| | || | || ||||||| Sbjct 2318 CAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGA-ACAC-TCTCTGATTATA 2375 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 | || || || |||||||| | || ||||| ||||| Sbjct 2376 ATATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCG 2412 >seq489 Length=77466 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || |||||||| || ||||| | || || || | | Sbjct 4620 ATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCTTCT 4561 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || || || || ||| Sbjct 4560 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAA 4501 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || ||| ||||||||||||| || || ||||| ||| || ||| | || || || || Sbjct 4500 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATG-GACGCACACTTTCCGACTACAA 4442 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| ||||| || || ||||| | || |||| || || Sbjct 4441 CATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGG 4394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449788089300440