Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6072 145 6e-30 seq489 91.5 1e-13 seq17788 87.8 1e-12 >seq6072 Length=35372 Score = 145 bits (160), Expect = 6e-30 Identities = 161/211 (76%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| |||||||| ||||||| ||| || || || ||||| ||||| || | ||||| Sbjct 17520 ATCGAATTGCGTTTGAGCGCCCAACTCACAGCCAAAATACTTGGTCGGATATGTTGCCGG 17579 Query 34497 ACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 ||| || | |||| | || | ||||| |||||| || | || || || |||||||| Sbjct 17580 ACGGCCGATGGCGCGT--GCCACTTCGGCCATGTTAACAAGCACGGTTTTAATGCCGTTA 17637 Query 34555 CCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 || || |||||||||||||| ||||| ||||||||||| ||||| |||||| ||| | Sbjct 17638 CCTTTGCCTTCGACCTTGGCTTGCAGA--CGCGGCATTTTATAGCGATAGAACATGTCAG 17695 Query 34613 CCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||| |||| || ||||| || || ||||| Sbjct 17696 TGACACTGCGATTTACGTTAACGGTACCCAT 17726 >seq489 Length=77466 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| ||||| ||||||||| | ||||| || ||||||||| | || |||||| Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || || ||||| |||||||| ||| | ||| || Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | || || | ||| || || || ||||| |||| | ||| | | || ||| Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| || || || |||| |||| | | ||||| || || Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGG 4394 >seq17788 Length=7208 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| ||||| | || || || ||||| || | || || ||| Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| ||| | || ||| |||||| ||||||||||| | || ||| Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | || || | ||| || |||||| |||| |||| ||||| | | ||||| Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTAT 2374 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 || || || |||||||| || ||||| |||| || | || || || ||| Sbjct 2375 AATATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCGTGGTGGA 2425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412743621464189