Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq6072 145 6e-30
seq489 91.5 1e-13
seq17788 87.8 1e-12
>seq6072
Length=35372
Score = 145 bits (160), Expect = 6e-30
Identities = 161/211 (76%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496
||||| |||||||| ||||||| ||| || || || ||||| ||||| || | |||||
Sbjct 17520 ATCGAATTGCGTTTGAGCGCCCAACTCACAGCCAAAATACTTGGTCGGATATGTTGCCGG 17579
Query 34497 ACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554
||| || | |||| | || | ||||| |||||| || | || || || ||||||||
Sbjct 17580 ACGGCCGATGGCGCGT--GCCACTTCGGCCATGTTAACAAGCACGGTTTTAATGCCGTTA 17637
Query 34555 CCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612
|| || |||||||||||||| ||||| ||||||||||| ||||| |||||| ||| |
Sbjct 17638 CCTTTGCCTTCGACCTTGGCTTGCAGA--CGCGGCATTTTATAGCGATAGAACATGTCAG 17695
Query 34613 CCACATTGCGGTTAACGTTCACAGTCCCCAT 34643
||| |||| || ||||| || || |||||
Sbjct 17696 TGACACTGCGATTTACGTTAACGGTACCCAT 17726
>seq489
Length=77466
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|||||||| ||||| ||||||||| | ||||| || ||||||||| | || ||||||
Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| || ||| | || || ||||| |||||||| ||| | ||| ||
Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
||||| | || || | ||| || || || ||||| |||| | ||| | | || |||
Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||||||||| || || || |||| |||| | | ||||| || ||
Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGG 4394
>seq17788
Length=7208
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || ||||| ||||| | || || || ||||| || | || || |||
Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| ||| ||| | || ||| |||||| ||||||||||| | || |||
Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|||||| | || || | ||| || |||||| |||| |||| ||||| | | |||||
Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTAT 2374
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500
|| || || |||||||| || ||||| |||| || | || || || |||
Sbjct 2375 AATATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCGTGGTGGA 2425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412743621464189
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |