Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq8176 91.5 2e-13 seq1420 87.8 3e-12 >seq8176 Length=26989 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/270 (68%), Gaps = 15/270 (6%) Strand=Plus/Plus Query 35580 GTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACG 35639 || || ||| ||| || || || |||| |||| ||| || ||||| | || || ||| Sbjct 9215 GTTGTATTGGAGAATTCTAGCGTTACATAGCCTTGCCATTCTGGTTCAAAAGGAGTGACG 9274 Query 35640 TTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTG 35699 || | || || || ||||| || ||||| || || | || | | | ||||||| Sbjct 9275 TT-----TNATGCCGCAACGCGCATAAGTGCTTTTTCCAAGGCAAATCGTTAAGACGTTG 9329 Query 35700 CGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGG 35759 ||||| |||||||| || || || ||||| |||| || |||||||| || ||||| | Sbjct 9330 CGCGGTATGCGGAAATACTCCACAGTGCGAGCCAAGGCAAAGCTGTTGGGAGGAAT---G 9386 Query 35760 ATGCTGTCA--GCCTT---AACCGGCTGCAGGCACTTGGGATCGAAGTTCTTCGGATCAA 35814 |||| || | |||| || | | | | || ||| || | ||| ||||| | Sbjct 9387 ATGCAGTAATCACCTTCGAAATCAAC--AAAACTTTTTTCATCAAAATGCTTTGGATCGA 9444 Query 35815 CCACTGCGCTGTTGATGTTGGTGAAGACTT 35844 |||| | |||| ||| |||||||| |||| Sbjct 9445 CCACAGTACTGTGGATATTGGTGAAAACTT 9474 >seq1420 Length=85926 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 122606 GGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAGT 122665 |||||||||||||||||||||||||| | ||||||| | ||||||| ||||||| | Sbjct 10610 GGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGTAGGTTCGAAT 10669 Query 122666 CCAACACGACCCACCA 122681 || ||||||||||||| Sbjct 10670 CCTACACGACCCACCA 10685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825715761526920