Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq489 111 1e-19 seq17788 86.0 4e-12 >seq489 Length=77466 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || || |||| |||| ||||||||||| ||||| || Sbjct 4429 CTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAA 4488 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || || |||||| | || | ||||| ||||| | || || ||||| | Sbjct 4489 GATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTGAC--A 4546 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| | ||| || || | ||| |||||||| || ||||| || || Sbjct 4547 TTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTG 4606 Query 34964 ACAAAGATCTGCAT 34977 || || |||||||| Sbjct 4607 ACGAATATCTGCAT 4620 >seq17788 Length=7208 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| || ||||| || || || | || |||| |||| || || || || ||| Sbjct 2388 TCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAAG 2329 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| || ||| | || | || || ||||| | || || |||||| | Sbjct 2328 ATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTT 2269 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||||| |||| || |||||||| ||||||||||| || ||| Sbjct 2268 TCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACA 2209 Query 34967 AAGATCTGCATG 34978 || ||||||||| Sbjct 2208 AAAATCTGCATG 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325615504243787