Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq1559 129 6e-25 >seq1559 Length=191813 Score = 129 bits (142), Expect = 6e-25 Identities = 201/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 25496 GGATCGTAATATTCTGTACATTTGTATTCAAAATCAGCAATATCACTA-ATCACAACAAA 25554 |||| |||||| || |||||||| |||||||||||||| |||| | | | || || | Sbjct 29133 GGATTGTAATAGTCAGTACATTTATATTCAAAATCAGC-ATATTGCGACAATACGACGTA 29075 Query 25555 GCCATGAGCGAAACCAGGAGGAATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAGAAC 25614 ||||| || ||||| || |||| ||||| ||||||| |||||| |||||||| | Sbjct 29074 CCCATGCGCTAAACCTGGCGGAAGCCAAATTTGTGTTCTATTCTCTTCAGATAGCTTTAT 29015 Query 25615 ACCTACCCATTCTCCAAATGTTGGACTACCAACCCTAATATCTACAGCAACATCATAAAC 25674 ||| ||||| | ||||| || || | | || | || ||| || || |||||| | || Sbjct 29014 GCCTGCCCATGCACCAAAAGTAGGCGAATCTACACGAACATCCACCGCCACATCAAACAC 28955 Query 25675 TTCACCACGAACACAGCGTACCAACTTCCCTTGTGGGTTTTTCTTTTGAAAATGAAGCCC 25734 || ||||| || || || | || ||||| || || | ||||| |||| | || Sbjct 28954 CTCTCCACGTACCACTCGAACTATTTTTCCTTGAGGATTGATGCTTTGATAATGCAAGCC 28895 Query 25735 ACGTAGAACTCCTCGGATAGAACGTGAATGGTTATCTTGGACAAA 25779 | || ||| || | ||| || ||||| ||||| || ||||| Sbjct 28894 TCTTAAAACACCATAAAAAGACCGAGAATGATTATCCTGAACAAA 28850 Score = 114 bits (126), Expect = 1e-20 Identities = 216/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 27115 GCGTGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGATT 27174 || ||||| ||||| || | |||||| | | ||| |||| ||||| || | ||| Sbjct 28022 GCATGATCTTCAACATACAGCCAGTCGCGGATTTGTGATCCATCTCCATAGACTCGAATT 27963 Query 27175 GGTTTATGCATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATGATAT 27234 || ||| || ||||| || || || || | ||||||||| ||||| Sbjct 27962 GGCTTACCTTCTAGCGCATTTGAAATTGTCAAGGGAATCAACTTTTCTGGAAACTGATAC 27903 Query 27235 GCTCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCAC 27294 |||||| ||||||| || | ||| || | || | || | |||||||| || ||||| Sbjct 27902 GCTCCATAATTATTAGAGCTATTAGTAACAATAGCAGGCAATCCATAAGTCCGCTGCCAA 27843 Query 27295 GCTCTTACCAAATGATCGCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGTTTATAA 27354 ||||| || ||||||||||| || ||||| || || |||||||||||||| || ||| Sbjct 27842 GCTCTGACTAAATGATCGCTGGCCGCTTTTGAAGCGGCATATGGACTACTAGGCGCATAG 27783 Query 27355 GGATTCTGTTCTGTAAACGGATAATCT--CCTTCTTCCAGATCACCATACACTTCATCTG 27412 | | ||| ||||| | |||| | ||| || |||||||| || ||||| | Sbjct 27782 GCTGTGGCTTCATTAAACAAGTCATCTGAGCCACTT--AGGTCACCATAAACCTCATCCG 27725 Query 27413 TTGAAATATGATGGAA 27428 | |||| ||||| || Sbjct 27724 TAGAAACGTGATGAAA 27709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475314674297760