Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq4101 212 2e-49 seq3386 102 3e-16 >seq4101 Length=142893 Score = 212 bits (234), Expect = 2e-49 Identities = 291/404 (72%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 188774 TAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTAC 188833 || ||||||| || || || || ||||| || | || ||||| |||| |||||| Sbjct 124661 TAATTGGCCCAACAGGCTCTGGCAAAACTTTGCTGGCGCAAACTATGGCGCGCATGTTAA 124720 Query 188834 ATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAG 188893 | || ||| | | || ||||||| || | ||||| || ||||||||||| ||||||| Sbjct 124721 ACGTGCCTTTCGTGATGGCTGATGCCACCACCTTAACCGAGGCTGGTTATGTCGGTGAAG 124780 Query 188894 ATGTGGAAAACGTATTGCTTCGTTTAATCCAAG-CAGCTGATTACGATATCGAATTAGCG 188952 ||||||| ||| | ||| | ||||| | || || ||| | || ||| |||| Sbjct 124781 ATGTGGAGAACATTGTGCAAAAACTGCTCCAAAACTGC-GAATACAAAATTGAAGAAGCG 124839 Query 188953 GAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACA 189012 | || |||||| | || || |||||| | ||||| ||| | | ||| |||| | | || Sbjct 124840 CAGCGCGGAATTATTTACATTGATGAAATTGATAAGATTTCCCGCAAAGCAGACAACCCA 124899 Query 189013 TCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAA 189072 ||||||||||| ||||| ||||||||||||||||| ||||| | |||||| | |||||| Sbjct 124900 TCCATTACCCGTGATGTTTCTGGCGAAGGAGTACAACAAGCCCTTTTAAAATTGATTGAA 124959 Query 189073 GGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTT 189132 || || || || || || |||| ||||| || || ||||| || | ||||| | | Sbjct 124960 GGAACTGTCGCCAACGTGCCTCAACAAGGCGGACGCAAACATCCAAATCAAGAGCTTTTG 125019 Query 189133 GAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTT 189176 || | || || || || || ||||||||| |||||| || || Sbjct 125020 CAAGTTGACACCACCAACATTTTGTTTATTTGTGGTGGTGCATT 125063 >seq3386 Length=122896 Score = 102 bits (112), Expect = 3e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 46576 AAACAATTTTGTTTTTAGACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTAT 46635 |||||||||||||| | || |||||||| || || ||||| ||||||||| |||||| Sbjct 109308 AAACAATTTTGTTTGTTGATGAAATACACCGATTTAATAAGTCTCAGCAAGATGCGTTAT 109249 Query 46636 TACCTTATGTTGAAGATGGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTT 46695 | ||||| | ||| || ||| || || || |||||||| ||||||||||| | || Sbjct 109248 TGCCTTACGCAGAAAGCGGCGAAATAACATTTATCGGTGCAACCACTGAAAATCCTTCTT 109189 Query 46696 TTGAAATTAAC 46706 ||||| | ||| Sbjct 109188 TTGAAGTCAAC 109178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591513221837504