Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq17788 194 3e-44 seq12041 156 8e-33 seq489 122 2e-22 >seq17788 Length=7208 Score = 194 bits (214), Expect = 3e-44 Identities = 172/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| || |||| ||| ||||||||||| |||||||||||||| || ||| ||| Sbjct 2412 CGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCA 2353 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||||| |||||||||||||| | ||||||||||||||| |||||||| || Sbjct 2352 TCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTG 2293 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || || || |||||| || || | ||| || Sbjct 2292 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATG 2233 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || ||||| |||||||| Sbjct 2232 GTCTTACCCGTGAGGGTTTTAACAAAAATCTGCAT 2198 >seq12041 Length=12732 Score = 156 bits (172), Expect = 8e-33 Identities = 196/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 198367 TAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAAT 198426 |||| |||| ||||||||| | ||||| | ||||| ||||| |||||||||||||||| Sbjct 5020 TAAGCGAAGCTAAAATGCATGGCTTTTTGCGCATGTATTGGGCAAAAAAGATACTTGAAT 4961 Query 198427 GGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAAC 198486 || || ||| ||||| | |||||| || ||| || || ||||||| Sbjct 4960 GGGCAGAAACGCCGGAGCAGGCTTTGGAATACGCTATACTGCTTAATGATAAGTATAGCT 4901 Query 198487 TAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATG 198546 |||| || | |||||| || || ||||| ||||| |||||||| ||| | || |||||| Sbjct 4900 TAGATGGAAGGGATCCGAATGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATG 4841 Query 198547 ATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTT 198606 | | || ||| || || ||| | ||||| || | | |||||||||||| |||| | Sbjct 4840 ACCAAGGATGGGCCGAGAGGCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGAT 4781 Query 198607 CTAAGAAAAAATTTGATGTTGCTGCATTT 198635 |||| ||| || ||||| ||||||||| Sbjct 4780 GTAAGCGAAAGTTCGATGTCGCTGCATTT 4752 >seq489 Length=77466 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || || ||||| || || || || || || || || || | Sbjct 4392 TACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGG 4451 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| || || |||||||| || | ||||| ||||| | Sbjct 4452 AAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGG 4511 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || || || ||||| || || ||||| || || || ||| ||| || | Sbjct 4512 GAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAA 4571 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || ||||| || || | || || || |||||||||||| Sbjct 4572 CCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATT 4621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981582236261347