Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq12041 132 9e-26 seq17788 95.1 2e-14 >seq12041 Length=12732 Score = 132 bits (146), Expect = 9e-26 Identities = 207/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 183023 TATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAA 183082 ||||||| || |||| | || | | || |||| ||||||||| | ||||| || | Sbjct 5047 TATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAAAATGCATGGCTTTTTGCGCA 4988 Query 183083 TGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATA 183142 |||| ||||| |||||||||||||||||| || ||| ||||| | |||||| || Sbjct 4987 TGTATTGGGCAAAAAAGATACTTGAATGGGCAGAAACGCCGGAGCAGGCTTTGGAATACG 4928 Query 183143 GTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTT 183202 ||| | || ||||||| |||| || | |||||| || || ||||| |||| Sbjct 4927 CTATACTGCTTAATGATAAGTATAGCTTAGATGGAAGGGATCCGAATGGTTACGTGGGTT 4868 Query 183203 GTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAA 183262 | |||||||| ||| | || |||| || || ||| || || ||| | ||||| | Sbjct 4867 GCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGGCCGAGAGGCCTGTCTTTGGCA 4808 Query 183263 AGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACATTT 183318 | | | |||||||||||| || | | |||| || || ||||| ||| ||||| Sbjct 4807 AAGTGCGCTATATGAATTATCAGGGATGTAAGCGAAAGTTCGATGTCGCTGCATTT 4752 >seq17788 Length=7208 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/144 (74%), Gaps = 11/144 (8%) Strand=Plus/Minus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| || ||| |||| ||||| |||||||||||||| || |||| || ||||| || Sbjct 2404 CAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAA 2345 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 |||||||||| | ||||||| ||||| | ||| |||| || || ||||| Sbjct 2344 CTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAAT 2285 Query 81746 CTTTGCTTTTATATTTTCAATCGT 81769 ||| ||||| | |||||| || || Sbjct 2284 CTTGGCTTTGACATTTTCGATAGT 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903191298421280