Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1169 318 1e-81 seq655 89.7 1e-12 >seq1169 Length=8375 Score = 318 bits (352), Expect = 1e-81 Identities = 609/884 (69%), Gaps = 25/884 (3%) Strand=Plus/Minus Query 110286 CGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGT 110345 ||||| | || | | |||||||||| || |||||| | ||||| | |||||| | Sbjct 2668 CGTGATTTTGGTTATAACTATTTTGGATTTAAAACTTTGGAACGATCGTATTTATTAAAA 2609 Query 110346 GTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATT 110405 | || || ||||| ||| | |||||||||||||| | ||||||||||||||||| Sbjct 2608 ATAAACGGAAAGATCGCTGAGAGACCTCAACACATGTTAATGCGTGTTGCGATTGGTATA 2549 Query 110406 CATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTA-TTAAGTAAAAAGAAAGC 110464 || || | |||||| | || | || ||| |||| || || || | || | | Sbjct 2548 CACGGTGAGGATATTGATGCAGCAATAGAAACTTATAATCTACTTTCGGAACGTTACTTC 2489 Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTG 110524 | ||||| | ||||| | ||| || | ||| ||| | ||| | |||| || Sbjct 2488 -ACGCATGCATCACCTACTTTGTTTGCTGCTGCAACCAATCGTCCGCAACTATCTTCATG 2430 Query 110525 CTTTCTTCTAGGAAT--TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 |||||| || ||| || || |||||||| ||||| |||| | | || | || || Sbjct 2429 TTTTCTTTTAACAATGGTAGCG--GATTCTATAGAAGGCATTTTTAAATCTGTAGAACAA 2372 Query 110583 ACTGCTCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTC 110641 ||| | || || |||| || | || ||||| ||||| | |||||| ||||| | Sbjct 2371 TGTGCGATGATATC-AAAATCTGCCGGTGGAATAGGTATAAATGTTCATTGCATTCGTGC 2313 Query 110642 AAAAGGAGCA--AATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 || || | ||| ||| | | || ||| | || | ||||||||| |||||| | Sbjct 2312 TAAGGGTACTTCAATTTCGGGAA--CTAATGGTACATCGAATGGACTTGTGCCAATGCTT 2255 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGG---TGGTAAGAGAAATGGCTCA 110756 ||||| || || | ||| |||||| ||||||| ||||||||| ||| || Sbjct 2254 AGAGTTTTTAATAATGTCGCACGATATGTAGATCAAGGAGGTGGTAAGAGGCCTGGAGCA 2195 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 |||||||| ||| | || ||||||||| |||| || || || ||||| || || ||| Sbjct 2194 TTTGCTATTTATTTAGAGCCTTGGCATGCAGACATTTTCGAGTTCTTGGATCTAAAAAAA 2135 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| ||| |||||||| ||||| |||||||||||||| || | |||||| |||| Sbjct 2134 AATACTGGAAAGGAAGAACACAGAGCTCGTGATTTATTTTACGCTCTTTGGATTCCAGAC 2075 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 | || |||||||| || | ||| || | |||||| ||||||||||||||| | Sbjct 2074 CTTTTTATGAAACGAGTAGAGGAAGATCGAGAGTGGTCACTTATGTGTCCTCATAAATGC 2015 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 ||||| || |||||| | || | ||||||||| | | || |||||||||||| || Sbjct 2014 CCTGGCCTTCATGATGTTTGGGGTGACGAGTTTGAAAAGTTATATGAAAAATATGAACAA 1955 Query 110997 GAAGGCAAGTTTCGCAA----ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGA 111052 |||| || ||||| | ||||| ||| ||| |||||||| || |||| Sbjct 1954 GAAG----GTCGCGCAAGTAGAAAAATTAAAGCACAATCTCTTTGGTTTTCTATAATTGA 1899 Query 111053 ATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAATCGCAAAT 111111 | | ||||| |||||||| ||||| ||||| |||| |||||| |||| |||| | ||| Sbjct 1898 AGCTCAAGTAGAAACTGGCACTCCATATATGTTGTTTAAAGATTCAT-GTAATAGAAAAA 1840 Query 111112 CTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || ||| ||| | || || ||||| | |||||||| ||| Sbjct 1839 GCAACCAACAAAATGTTGGCACCATTAAATGCAGTAATTTATGC 1796 >seq655 Length=34463 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| | ||| | ||| || || |||||| | || ||||| ||||||||||||| Sbjct 21723 CATTTACACGACGAGGATATTGTGCTATTCAATCGTCAGCCATCGTTGCATAAAATGTCA 21782 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || ||| | ||| | |||||| | | || ||||| || |||| | | || Sbjct 21783 ATTATGTCACATCGTGCCAAAGTGCAACCACAGCGCACCTTTCGTTTCAATGAATGCGCC 21842 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| || ||||| ||||| ||||| |||||||||||| | ||| | || ||| Sbjct 21843 TGTACGCCCTACAATGCTGATTTCGATGGCGATGAAATGAATTTACATCTGCCACAA 21899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186516692802553