Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17788 113 1e-19 seq489 96.9 8e-15 >seq17788 Length=7208 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || |||||| | || || ||| ||| ||| Sbjct 2201 CAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCGGAC 2260 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || |||||||||||| || || || Sbjct 2261 ACTATCGAAAATGTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAACA 2319 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || ||||| || || || |||||||||||||| | || | | ||||| || | Sbjct 2320 ACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAATAT 2379 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| || ||| | || | |||||| | ||||| Sbjct 2380 CCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCG 2418 >seq489 Length=77466 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| |||||||| |||||| ||||| || || || || || ||||| || || Sbjct 4623 AAAATG---CAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAG 4567 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||||||| |||| || ||| ||||| || || ||||| || ||| || Sbjct 4566 CCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCA 4507 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||| ||||| ||||| ||||||||||| | || | |||| Sbjct 4506 GACCAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGAC 4447 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| | || || ||||| || || || Sbjct 4446 TACAACATTCAAAAGGAGTCGACCCTGCA 4418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181525938295633