Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq17788 113 1e-19
seq489 96.9 8e-15
>seq17788
Length=7208
Score = 113 bits (124), Expect = 1e-19
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| ||||| || || || |||||| | || || ||| ||| |||
Sbjct 2201 CAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCGGAC 2260
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| ||||| || ||||| || |||||| || |||||||||||| || || ||
Sbjct 2261 ACTATCGAAAATGTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAACA 2319
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | || ||||| || || || |||||||||||||| | || | | ||||| || |
Sbjct 2320 ACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAATAT 2379
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||| || ||| | || | |||||| | |||||
Sbjct 2380 CCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCG 2418
>seq489
Length=77466
Score = 96.9 bits (106), Expect = 8e-15
Identities = 147/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| |||||||| |||||| ||||| || || || || || ||||| || ||
Sbjct 4623 AAAATG---CAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAG 4567
Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283
||||||||| |||| || ||| ||||| || || ||||| || ||| ||
Sbjct 4566 CCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCA 4507
Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343
||| || | || ||||| ||||| ||||| ||||||||||| | || | ||||
Sbjct 4506 GACCAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGAC 4447
Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|||||| | || || ||||| || || ||
Sbjct 4446 TACAACATTCAAAAGGAGTCGACCCTGCA 4418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181525938295633
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |