Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq17788 105 6e-18 seq489 104 2e-17 >seq17788 Length=7208 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||||||||||||| | | || ||||| || || || || || | || Sbjct 2419 ACGAAGGCGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGT 2360 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | |||||| || | | |||||||||| |||||||||||||| || || Sbjct 2359 TCGACCATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCC 2300 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | ||| || | || || || || | Sbjct 2299 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAG 2240 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || ||||| || || ||||| | |||||||||||| Sbjct 2239 AGTGATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCATG 2197 >seq489 Length=77466 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | |||||||| | | | ||||| |||||||||||||||||| | || Sbjct 4399 ACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGT 4458 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || || || |||| | |||| ||||||||||| ||||| || ||||| Sbjct 4459 GCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCC 4518 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || || || || | | || | || || | ||||| || || | Sbjct 4519 CTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAA 4578 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || |||||||| | ||| |||||||| Sbjct 4579 GGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCAT 4620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476495186876280