Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 722 0.0
seq4404 170 3e-37
>seq1169
Length=8375
Score = 722 bits (800), Expect = 0.0
Identities = 1280/1849 (69%), Gaps = 22/1849 (1%)
Strand=Plus/Plus
Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453
||| || ||||| |||| ||| ||||| || ||||| |||||| ||||| || ||
Sbjct 851 TGCCGGCTTTGTGCGTAAATAATACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAA 910
Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513
|| || || | ||| |||| |||| ||||| | ||| ||||| | || || ||
Sbjct 911 GTGTATTGAAGTCAATTTACCATAATTTGGTTCGGCGACATGTATATTGAATGACTGGCT 970
Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573
||| || |||||||||||||||||||| ||||||||||| | ||| || ||| ||
Sbjct 971 TTGGTCAATGAAAGCTCCTCTATCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTC 1030
Query 68574 CCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGA 68630
||| | ||| ||| | | | | ||| ||| | |||| | || ||| |||||| ||
Sbjct 1031 CCAGACAGTTTTATATAAGTCTCTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGA 1090
Query 68631 TCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690
|||| | || | || |||| || || ||||||| |||||| | || |||||
Sbjct 1091 ACCACGACTTGACACTATATTATTTTTCATATCATCATCCCACAAATCCAATTCAGTTAA 1150
Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750
| | | | | || | ||||| | |||||| || |||||||| || || | |||||
Sbjct 1151 ATCACGTAATAAATAATGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTA 1210
Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810
||||| || || ||||| | |||||||||||||||| |||||||| || || ||
Sbjct 1211 TATATTTGAAGTGTAGGGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGC 1270
Query 68811 AGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTT 68870
|| ||||| ||||| || | | |||||| | |||| || || ||| ||
Sbjct 1271 TGTAGGCATTGGTGCTACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTT 1330
Query 68871 TAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930
|| |||| ||||||||| | || | |||| ||| | || |||||||| ||
Sbjct 1331 TAATTGTTGCCAATCCCACAAATTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGAT 1390
Query 68931 TCCGTTACTTGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988
||| || ||| ||| | ||| | ||| || ||||| || || | || |||||| |||
Sbjct 1391 TCCTTTGCTT--ATAGGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGT 1448
Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048
||||||||||| ||||| | || |||||| || ||||| ||||| | | ||| | |
Sbjct 1449 TCACAACTTGCTTCTAAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGA 1508
Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108
|||||| || || | |||||| | | | ||| | ||||| || || ||||||
Sbjct 1509 AAGGCTTCTTCGCTTTCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGA 1568
Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATA 69167
|| ||||| || ||||| | ||||||| | || |||||| ||| ||| | | ||||||
Sbjct 1569 ACGCCAATGCCAATAGGACGATGTCTC-AAGTTAGACTTTCGAGCCTCTTGCAAAGGATA 1627
Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227
|||||| || || || |||||||| |||||||| ||||| ||| || |||||||
Sbjct 1628 ATAATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAA 1687
Query 69228 TTTGAGAAAATCAAATCGTCCATC---TATAACAAACATATTCAGTGCTACAGATGCTAG 69284
|| |||||| || | || ||||||||||| | || | ||||| |
Sbjct 1688 CTTTTCGAAATCATATTTTTTTTCCGAGGACACAAACATATTTAAGGCAATCGATGCCAA 1747
Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACT 69344
||| || || || | |||| | | ||||| || || ||||| |||| ||||||
Sbjct 1748 ATTGCATACCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACT 1807
Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404
||||| || || || | |||||| || || || ||| | ||||| | || || | |
Sbjct 1808 GCATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAA 1867
Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT-AG 69463
||| | ||||| |||||||| | |||| ||| || ||||| ||||| || | |
Sbjct 1868 CATATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAA-GAGATTGTG 1926
Query 69464 CATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAA 69521
| || ||| ||| | ||| | |||| |||||||| | ||||| | ||| ||
Sbjct 1927 CTTTAATT--TTTCTACTTGCGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAA 1984
Query 69522 TTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACAC 69581
|| || ||||||||||||| | ||||| |||| || |||||||| | ||||||| |
Sbjct 1985 CTCGTCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTC 2044
Query 69582 ATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641
||| |||| |||||||||||||| || || |||||||||||||| ||| | |||
Sbjct 2045 TCGATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATC 2104
Query 69642 TCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATC 69701
| | ||| | |||||| ||||| ||||||||||| ||||| | ||||| | ||| ||
Sbjct 2105 ACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTC 2164
Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761
| |||||| || |||| ||| || || | |||| || | ||| ||||| |||||
Sbjct 2165 TGCATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATC 2224
Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821
|| |||| || |||||| | ||||| ||||| || | || ||||| ||| ||||
Sbjct 2225 TACATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACC 2284
Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881
||| ||||| ||||| || | || | || ||||| | || | || |||||||||
Sbjct 2285 ATTAGTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCC 2344
Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941
|| || ||| || || | ||||| ||| | | | | | || || |||||
Sbjct 2345 ACCGGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGA 2404
Query 69942 ATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCAT 70000
||| ||| || |||||| ||||||||| ||| | ||| || | | ||| | |||
Sbjct 2405 ATCCGCTACCATTGTTAA-AAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAG 2463
Query 70001 TAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA 70060
||| || ||||| ||||| || ||||| | ||| ||||| ||||| || ||||| |
Sbjct 2464 CAAACAAAGTAGGTGATGCATGCGTGAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTA 2523
Query 70061 TAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119
| |||| || |||||| ||| | || || || ||||| |||||||| ||||| || |||
Sbjct 2524 TTGCTGCATCAATATCCTCACCG-TGTATACCAATCGCAACACGCATTAACATGTGTTGA 2582
Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179
|||| || | | || |||||||| || | || ||| ||||| |||||||||
Sbjct 2583 GGTCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACGATCGTTCCAAAGTTTTAAAT 2642
Query 70180 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228
||||||||||| || ||| || | ||||||||||| | |||||||
Sbjct 2643 CCAAAATAGTTATAACCAAAATCACGGTCGTAAATAATTGCGGAATTTA 2691
>seq4404
Length=3800
Score = 170 bits (188), Expect = 3e-37
Identities = 404/602 (67%), Gaps = 14/602 (2%)
Strand=Plus/Minus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326
||||||||||| |||| |||| |||| || ||| | ||||| || |||||
Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
||| ||||| || || |||||||||||| || || ||||| |||| || || ||
Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968
Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446
||||||| || ||||| ||| || || |||| | || | ||| | |
Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908
Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506
| ||| || ||||| || || ||| ||||| || ||||||||| || || || |
Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848
Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT--TAT 39564
|||| || | || || || | || || | || || | || ||||| | || | |
Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788
Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGA 39623
| || ||| ||| | | || | |||| ||||| | |||| |||| | || |
Sbjct 2787 CAATAATAC--GCTCTTTGGTTGGACGCTGCACCAAATGATGGAACA-TAAGAACAGCAA 2731
Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683
||||||| |||| || ||||| | ||||||||| || || ||||| | |||||||
Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671
Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743
| || ||||| || || |||||||| |||| |||||| ||| |||||| ||||| |
Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611
Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATG-TATCCAC 39799
| || || ||||| |||| || |||||| ||| || || | ||| ||| |||||
Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCG-AAATTAGCTGATTTCGATGAAATCCAA 2552
Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859
| ||||||||||| || || ||| ||||| || || || ||||| || |||
Sbjct 2551 GAGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGA 2492
Query 39860 TA 39861
||
Sbjct 2491 TA 2490
Score = 107 bits (118), Expect = 3e-18
Identities = 188/274 (69%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||| | | ||| || || ||||| | ||||||||||| || || | ||||| || ||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
|| || || || || || || | ||| ||||| | ||| || ||| | || | ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056
|||||||||||||||| || ||||| ||| ||||| || ||||| || || ||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116
|||| || | || | ||| ||| || | | || || || | ||||||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
||| ||| ||||||| || || ||||||||||||
Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686741597811720
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