Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1169 722 0.0 seq4404 170 3e-37 >seq1169 Length=8375 Score = 722 bits (800), Expect = 0.0 Identities = 1280/1849 (69%), Gaps = 22/1849 (1%) Strand=Plus/Plus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| || ||||| |||| ||| ||||| || ||||| |||||| ||||| || || Sbjct 851 TGCCGGCTTTGTGCGTAAATAATACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAA 910 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 || || || | ||| |||| |||| ||||| | ||| ||||| | || || || Sbjct 911 GTGTATTGAAGTCAATTTACCATAATTTGGTTCGGCGACATGTATATTGAATGACTGGCT 970 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 ||| || |||||||||||||||||||| ||||||||||| | ||| || ||| || Sbjct 971 TTGGTCAATGAAAGCTCCTCTATCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTC 1030 Query 68574 CCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGA 68630 ||| | ||| ||| | | | | ||| ||| | |||| | || ||| |||||| || Sbjct 1031 CCAGACAGTTTTATATAAGTCTCTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGA 1090 Query 68631 TCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 |||| | || | || |||| || || ||||||| |||||| | || ||||| Sbjct 1091 ACCACGACTTGACACTATATTATTTTTCATATCATCATCCCACAAATCCAATTCAGTTAA 1150 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | | | | | || | ||||| | |||||| || |||||||| || || | ||||| Sbjct 1151 ATCACGTAATAAATAATGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTA 1210 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 ||||| || || ||||| | |||||||||||||||| |||||||| || || || Sbjct 1211 TATATTTGAAGTGTAGGGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGC 1270 Query 68811 AGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTT 68870 || ||||| ||||| || | | |||||| | |||| || || ||| || Sbjct 1271 TGTAGGCATTGGTGCTACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTT 1330 Query 68871 TAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || |||| ||||||||| | || | |||| ||| | || |||||||| || Sbjct 1331 TAATTGTTGCCAATCCCACAAATTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGAT 1390 Query 68931 TCCGTTACTTGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 ||| || ||| ||| | ||| | ||| || ||||| || || | || |||||| ||| Sbjct 1391 TCCTTTGCTT--ATAGGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGT 1448 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 ||||||||||| ||||| | || |||||| || ||||| ||||| | | ||| | | Sbjct 1449 TCACAACTTGCTTCTAAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGA 1508 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 |||||| || || | |||||| | | | ||| | ||||| || || |||||| Sbjct 1509 AAGGCTTCTTCGCTTTCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGA 1568 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATA 69167 || ||||| || ||||| | ||||||| | || |||||| ||| ||| | | |||||| Sbjct 1569 ACGCCAATGCCAATAGGACGATGTCTC-AAGTTAGACTTTCGAGCCTCTTGCAAAGGATA 1627 Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227 |||||| || || || |||||||| |||||||| ||||| ||| || ||||||| Sbjct 1628 ATAATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAA 1687 Query 69228 TTTGAGAAAATCAAATCGTCCATC---TATAACAAACATATTCAGTGCTACAGATGCTAG 69284 || |||||| || | || ||||||||||| | || | ||||| | Sbjct 1688 CTTTTCGAAATCATATTTTTTTTCCGAGGACACAAACATATTTAAGGCAATCGATGCCAA 1747 Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACT 69344 ||| || || || | |||| | | ||||| || || ||||| |||| |||||| Sbjct 1748 ATTGCATACCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACT 1807 Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404 ||||| || || || | |||||| || || || ||| | ||||| | || || | | Sbjct 1808 GCATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAA 1867 Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT-AG 69463 ||| | ||||| |||||||| | |||| ||| || ||||| ||||| || | | Sbjct 1868 CATATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAA-GAGATTGTG 1926 Query 69464 CATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAA 69521 | || ||| ||| | ||| | |||| |||||||| | ||||| | ||| || Sbjct 1927 CTTTAATT--TTTCTACTTGCGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAA 1984 Query 69522 TTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACAC 69581 || || ||||||||||||| | ||||| |||| || |||||||| | ||||||| | Sbjct 1985 CTCGTCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTC 2044 Query 69582 ATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATC 69641 ||| |||| |||||||||||||| || || |||||||||||||| ||| | ||| Sbjct 2045 TCGATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATC 2104 Query 69642 TCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATC 69701 | | ||| | |||||| ||||| ||||||||||| ||||| | ||||| | ||| || Sbjct 2105 ACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTC 2164 Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 | |||||| || |||| ||| || || | |||| || | ||| ||||| ||||| Sbjct 2165 TGCATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATC 2224 Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821 || |||| || |||||| | ||||| ||||| || | || ||||| ||| |||| Sbjct 2225 TACATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACC 2284 Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881 ||| ||||| ||||| || | || | || ||||| | || | || ||||||||| Sbjct 2285 ATTAGTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCC 2344 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941 || || ||| || || | ||||| ||| | | | | | || || ||||| Sbjct 2345 ACCGGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGA 2404 Query 69942 ATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCAT 70000 ||| ||| || |||||| ||||||||| ||| | ||| || | | ||| | ||| Sbjct 2405 ATCCGCTACCATTGTTAA-AAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAG 2463 Query 70001 TAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAA 70060 ||| || ||||| ||||| || ||||| | ||| ||||| ||||| || ||||| | Sbjct 2464 CAAACAAAGTAGGTGATGCATGCGTGAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTA 2523 Query 70061 TAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 | |||| || |||||| ||| | || || || ||||| |||||||| ||||| || ||| Sbjct 2524 TTGCTGCATCAATATCCTCACCG-TGTATACCAATCGCAACACGCATTAACATGTGTTGA 2582 Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179 |||| || | | || |||||||| || | || ||| ||||| ||||||||| Sbjct 2583 GGTCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACGATCGTTCCAAAGTTTTAAAT 2642 Query 70180 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 ||||||||||| || ||| || | ||||||||||| | ||||||| Sbjct 2643 CCAAAATAGTTATAACCAAAATCACGGTCGTAAATAATTGCGGAATTTA 2691 >seq4404 Length=3800 Score = 170 bits (188), Expect = 3e-37 Identities = 404/602 (67%), Gaps = 14/602 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326 ||||||||||| |||| |||| |||| || ||| | ||||| || ||||| Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 ||| ||||| || || |||||||||||| || || ||||| |||| || || || Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 ||||||| || ||||| ||| || || |||| | || | ||| | | Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 | ||| || ||||| || || ||| ||||| || ||||||||| || || || | Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT--TAT 39564 |||| || | || || || | || || | || || | || ||||| | || | | Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGA 39623 | || ||| ||| | | || | |||| ||||| | |||| |||| | || | Sbjct 2787 CAATAATAC--GCTCTTTGGTTGGACGCTGCACCAAATGATGGAACA-TAAGAACAGCAA 2731 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 ||||||| |||| || ||||| | ||||||||| || || ||||| | ||||||| Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 | || ||||| || || |||||||| |||| |||||| ||| |||||| ||||| | Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATG-TATCCAC 39799 | || || ||||| |||| || |||||| ||| || || | ||| ||| ||||| Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCG-AAATTAGCTGATTTCGATGAAATCCAA 2552 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | ||||||||||| || || ||| ||||| || || || ||||| || ||| Sbjct 2551 GAGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGA 2492 Query 39860 TA 39861 || Sbjct 2491 TA 2490 Score = 107 bits (118), Expect = 3e-18 Identities = 188/274 (69%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||| | | ||| || || ||||| | ||||||||||| || || | ||||| || || Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || || || || || || || | ||| ||||| | ||| || ||| | || | || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 |||||||||||||||| || ||||| ||| ||||| || ||||| || || || Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 |||| || | || | ||| ||| || | | || || || | |||||| Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 ||| ||| ||||||| || || |||||||||||| Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686741597811720