Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3969 194 1e-44 seq6120 183 2e-41 seq9199 176 4e-39 seq4404 123 2e-23 >seq3969 Length=39444 Score = 194 bits (214), Expect = 1e-44 Identities = 277/389 (71%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||| || ||||| || | ||||| | || ||||| ||| ||||||||| ||| Sbjct 2021 CCAAAAATCGTCAATGGACCGCAGATCTTGGACAAGTATGTCGGTGAATCGGAAGCCAAT 2080 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 ||||| || | ||||| || || |||||||| | ||||| | || | || ||| | Sbjct 2081 GTACGTCGGCTTTTTGCCGATGCCGAAGAAGAGGAGAAACGACTTGGTCCGAATAGTGGT 2140 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 | || || ||||| | ||||| | || ||||| ||||||||| | ||||| | || | Sbjct 2141 CTACATATCATAATCTTTGATGAGATCGATGCAATTTGTAAGCAACGTGGTTCGGTTGCA 2200 Query 19609 ---AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| || ||||| || || || || ||||| || ||| ||||| | || || ||| Sbjct 2201 GGCAATAGCGGCGTACACGATACGGTCGTTAATCAGCTACTGACAAAAATCGATGGCGTT 2260 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||| ||||||||||| | |||||||||||||| ||| ||| || | || ||| Sbjct 2261 GATCAATTGAATAATATTCTTGTTATTGGCATGACCAATCGACGTGACATGATTGACGAT 2320 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| || |||| |||||||| | ||| || |||| || || | || || |||| | Sbjct 2321 GCCCTACTACGTCCCGGTCGTCTTGAAGTACAGATGGAGATCAGTTTGCCAAATGAGGAT 2380 Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811 || ||||| | || || |||||||| || Sbjct 2381 GGCCGTGTACAGATATTGAACATACACAC 2409 >seq6120 Length=7451 Score = 183 bits (202), Expect = 2e-41 Identities = 379/559 (68%), Gaps = 20/559 (4%) Strand=Plus/Plus Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 ||||||||||| || ||||| ||||| | ||| || ||||| || |||||| | || Sbjct 4616 GATCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAATATAAGACCTGC 4675 Query 40929 TACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAG-----ATACGA 40983 || |||||||||| |||| | || ||||| || || || | ||||| Sbjct 4676 GACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATTGAAACCATACGC 4735 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 |||||| | | ||| || || || || ||| ||| |||||||| ||| ||| Sbjct 4736 ACAAATCCAA--CGGAT---CGTCGGATTATTATGTCCGCTTGGAACCCTTTGGATATAC 4790 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATG-TCAGTTTTACGTTTGCAA------- 41095 ||||||||||||||| || || |||| || ||| || ||||| | ||| Sbjct 4791 CGCAGATGGCATTGCCACCATGCCA-TTGTCTTGCTCAATTCTACGTAT-CAACGACACG 4848 Query 41096 TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTT 41155 ||||| |||| || || |||||||| | | || ||||| || || || || || Sbjct 4849 CGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTGCCCTT 4908 Query 41156 TAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACC 41215 |||||| || ||||| ||||| ||||| ||||| || || || || | ||||| Sbjct 4909 TAACATCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTTAAACC 4968 Query 41216 TGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275 || || || ||||||||| | || |||| ||| | |||| ||| |||||||| || || Sbjct 4969 GGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGAACCATT 5028 Query 41276 AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGT 41335 | ||||| || | || | || ||||||| || | || | ||||| || || Sbjct 5029 GAAGGAACAGTTGGCGCGTCACCCACGACCATTCCCGAAACTTGTCATTAAGCGTAAAGT 5088 Query 41336 TGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCC 41395 || ||||| || |||||| | || || |||| ||| | ||||||||| ||||| Sbjct 5089 GGACAACATCGAAGATTTTAAATTTGAGGACTTTGAAGTTATTGGTTACAATCCATACCC 5148 Query 41396 TAAAATCCACATGGACATG 41414 ||||| || ||||| ||| Sbjct 5149 GAAAATTCAAATGGAGATG 5167 >seq9199 Length=10988 Score = 176 bits (194), Expect = 4e-39 Identities = 466/707 (66%), Gaps = 16/707 (2%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| ||| || ||| || ||| || || ||||||||| || ||||| Sbjct 8511 ATTGGCGGCTTGGATAAGGAATTTAATGCAATTTTCCGGCGAGCATTTGCCTCACGTGTG 8570 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 || | | || | | | || ||||| || || || || |||| || ||| Sbjct 8571 TTCCCACCTGAATTGGTGGAGCAGTTGGGCATAAAGCACGTAAAGGGTATTTTACTGTAT 8630 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || || || ||| || |||||| | || || || || || | | | | | | Sbjct 8631 GGACCGCCAGGTACAGGTAAAACACTGATGGCACGACAAATTGGAACCATGTTGAATGCA 8690 Query 19423 CAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAA 19482 | | || || ||||| |||||||| |||| | | || ||||| || | || || Sbjct 8691 CGAGAACCGAAGATTGTCAATGGTCCACAAATTCTCGACAAGTATGTCGGCGAGTCCGAG 8750 Query 19483 GAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA 19542 | |||| |||| ||||||||||| ||||| || |||||| | ||||| || || | || Sbjct 8751 GCAAATATACGTCGTTTGTTTGCGGACGCGGAGGAAGAAGAGAAACGCTTGGGCCCGAAC 8810 Query 19543 AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT 19602 ||| |||||||| || || | || || | ||||| || ||||| | || ||| Sbjct 8811 AGTGGCTTGCACATAATTATTTTTGACGAGATTGACGCCATTTGTAAAGCTCGTGGCTCT 8870 Query 19603 GGTG------TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 | || | ||| ||||||||||| || || |||||| | || | || | || Sbjct 8871 GTTGCGGGCAATAGTGGCGTACATGACACAGTCGTTAATCAATTGTTGGCCAAGATTGAT 8930 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716 || || | || || || |||||||| || ||||||||||| ||| ||| || | || Sbjct 8931 GGCGTCGAACAGCTTAACAATATTTTGGTCATTGGCATGACCAATCGACGCGATATGATT 8990 Query 19717 GACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGAT 19776 ||| || | || || ||||| || || ||| || |||| ||||| | || || || Sbjct 8991 GACGAGGCGCTCTTGCGTCCCGGCCGTTTAGAAGTACAGATGGAAATCAGTTTGCCTAAT 9050 Query 19777 GAATGTGGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACCT 19835 ||| ||||| || | ||| | || ||||| || | ||| |||||| || |||| Sbjct 9051 GAAGAGGGACGCGTTCAGATTCTCAATATACACAC-TAAACGCATGCGTGAATTTAAC-- 9107 Query 19836 TTTAAAT-GA---CGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCG 19891 |||| || |||||| ||| | || || || || || || |||| ||||| Sbjct 9108 --AAAATCGACAGCGATGTCGATAACAAGGAGATCGCCGCATTGACGAAGAACTTTAGCG 9165 Query 19892 GCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 |||| ||||| || || ||||| | ||||| || |||| || ||| Sbjct 9166 GCGCTGAACTAGAAGGTTTAGTACGTGCCGCTCAGTCAACAGCCATG 9212 >seq4404 Length=3800 Score = 123 bits (136), Expect = 2e-23 Identities = 194/276 (70%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 43747 AAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACA 43806 ||| ||| |||| ||||| ||||||| || ||||| ||| || | || ||||| || | Sbjct 2133 AAAGGCAGAGGCATCATTCTGGACAGTTGAGGAAGTAGATCTGTCGAAGGACTTGACAGA 2192 Query 43807 TTGGATT--GCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 |||| | || | | || || ||||| ||||| || ||||| || ||| Sbjct 2193 TTGGGCTAAGCTTACTGATAACGAGCGT--CATTTCATATCGCACGTGTTGGCTTTCTTT 2250 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924 ||||| ||| || || || |||||||||||||| || || |||||||||||| Sbjct 2251 GCTGCTTCCGATGGCATTGTGAATGAAAATTTGGTCGAGCGTTTCAGCCAAGAAGTTCAA 2310 Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAA 43984 | | || ||||| || || ||||| || ||||||||||| |||||| | || || ||| Sbjct 2311 GTGACTGAGGCACGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTGCACTCCGAA 2370 Query 43985 ATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| || || | || || || || || | |||| Sbjct 2371 ATGTATAGCGTTTTAATCGACACCTATATAAGAGAT 2406 Score = 120 bits (132), Expect = 2e-22 Identities = 366/555 (66%), Gaps = 18/555 (3%) Strand=Plus/Plus Query 44042 TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG 44101 || ||||| || || || | || || |||||| || || || ||||| || ||| Sbjct 2496 TTCAATGCAATTGAGACCATGCCCGCTGTTAAACGCAAGGCTGATTGGGCGCTCTCTTGG 2555 Query 44102 ATAAATTC-AAATGA--TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGC 44158 || || |||| | | ||| || || || || | || ||||| | || || ||| Sbjct 2556 ATTTCATCGAAATCAGCTAATTTCGGTGAGAGAATTATTGCCTTTGCTGCGGTCGAGGGC 2615 Query 44159 ATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCT 44218 || |||||| || |||||| |||| |||||| | |||||||| || | |||||| Sbjct 2616 ATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGCTGAAGAAACGTGGCCTTATGCCT 2675 Query 44219 GGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCT 44278 || || || || || ||||| ||||| ||||||||||| ||||| || || |||||| Sbjct 2676 GGTTTAACATTCTCCAATGAATTAATTTCGCGTGATGAAGGTTTACACTGTGACTTTGCT 2735 Query 44279 -TGCT--TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGAT 44335 | || |||| | | || | | || || | || | | || |||| || Sbjct 2736 GTTCTTATGTTCCAT-CATTTGGTGCAG-CGTCCAACC--AAAG--AGCGTATTATTGAA 2789 Query 44336 ATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAAT 44395 || || |||||||| || ||||| || ||||| |||| ||||| || || || Sbjct 2790 ATCATTTCGGAGGCAGTCAAAATAGAGCAGGAATTCTTGACCGATGCATTGCCGGTTAAC 2849 Query 44396 TTAATAGGAATGAA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGT 44452 | || || ||||| | ||| ||||| |||||||||| | | || ||||| Sbjct 2850 CTGATTGGCATGAATTGTAAAC---TGATGTCGGAATATATTGAGTTTGTCGCTGATCGC 2906 Query 44453 TTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATG 44512 |||| | ||||| || | ||| ||| | | | || || || || ||| Sbjct 2907 CTACTAGTTGAACTCGGCGTGGGCAAAATCTACAACACAAAGAATCCATTCACATTCATG 2966 Query 44513 GAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 ||| |||||| |||| ||||| || |||||||| || ||| || || |||||||| Sbjct 2967 GAATTGATTTCGCTGGACGGCAAGACGAACTTTTTCGAGAAAAAAGTAGGCGAATATCAA 3026 Query 44573 CGAATGGGCGTCATG 44587 || ||||| || ||| Sbjct 3027 CGCATGGGTGTAATG 3041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397361672885365