Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq3969 194 1e-44
seq6120 183 2e-41
seq9199 176 4e-39
seq4404 123 2e-23
>seq3969
Length=39444
Score = 194 bits (214), Expect = 1e-44
Identities = 277/389 (71%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|| ||||| || ||||| || | ||||| | || ||||| ||| ||||||||| |||
Sbjct 2021 CCAAAAATCGTCAATGGACCGCAGATCTTGGACAAGTATGTCGGTGAATCGGAAGCCAAT 2080
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
||||| || | ||||| || || |||||||| | ||||| | || | || ||| |
Sbjct 2081 GTACGTCGGCTTTTTGCCGATGCCGAAGAAGAGGAGAAACGACTTGGTCCGAATAGTGGT 2140
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608
| || || ||||| | ||||| | || ||||| ||||||||| | ||||| | || |
Sbjct 2141 CTACATATCATAATCTTTGATGAGATCGATGCAATTTGTAAGCAACGTGGTTCGGTTGCA 2200
Query 19609 ---AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
||| || ||||| || || || || ||||| || ||| ||||| | || || |||
Sbjct 2201 GGCAATAGCGGCGTACACGATACGGTCGTTAATCAGCTACTGACAAAAATCGATGGCGTT 2260
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722
| ||| ||||||||||| | |||||||||||||| ||| ||| || | || |||
Sbjct 2261 GATCAATTGAATAATATTCTTGTTATTGGCATGACCAATCGACGTGACATGATTGACGAT 2320
Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782
||| || |||| |||||||| | ||| || |||| || || | || || |||| |
Sbjct 2321 GCCCTACTACGTCCCGGTCGTCTTGAAGTACAGATGGAGATCAGTTTGCCAAATGAGGAT 2380
Query 19783 GGACGTGTGGAAATTTTAAACATACATAC 19811
|| ||||| | || || |||||||| ||
Sbjct 2381 GGCCGTGTACAGATATTGAACATACACAC 2409
>seq6120
Length=7451
Score = 183 bits (202), Expect = 2e-41
Identities = 379/559 (68%), Gaps = 20/559 (4%)
Strand=Plus/Plus
Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928
||||||||||| || ||||| ||||| | ||| || ||||| || |||||| | ||
Sbjct 4616 GATCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAATATAAGACCTGC 4675
Query 40929 TACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAG-----ATACGA 40983
|| |||||||||| |||| | || ||||| || || || | |||||
Sbjct 4676 GACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATTGAAACCATACGC 4735
Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043
|||||| | | ||| || || || || ||| ||| |||||||| ||| |||
Sbjct 4736 ACAAATCCAA--CGGAT---CGTCGGATTATTATGTCCGCTTGGAACCCTTTGGATATAC 4790
Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATG-TCAGTTTTACGTTTGCAA------- 41095
||||||||||||||| || || |||| || ||| || ||||| | |||
Sbjct 4791 CGCAGATGGCATTGCCACCATGCCA-TTGTCTTGCTCAATTCTACGTAT-CAACGACACG 4848
Query 41096 TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTT 41155
||||| |||| || || |||||||| | | || ||||| || || || || ||
Sbjct 4849 CGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTGCCCTT 4908
Query 41156 TAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACC 41215
|||||| || ||||| ||||| ||||| ||||| || || || || | |||||
Sbjct 4909 TAACATCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTTAAACC 4968
Query 41216 TGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275
|| || || ||||||||| | || |||| ||| | |||| ||| |||||||| || ||
Sbjct 4969 GGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGAACCATT 5028
Query 41276 AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGT 41335
| ||||| || | || | || ||||||| || | || | ||||| || ||
Sbjct 5029 GAAGGAACAGTTGGCGCGTCACCCACGACCATTCCCGAAACTTGTCATTAAGCGTAAAGT 5088
Query 41336 TGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCC 41395
|| ||||| || |||||| | || || |||| ||| | ||||||||| |||||
Sbjct 5089 GGACAACATCGAAGATTTTAAATTTGAGGACTTTGAAGTTATTGGTTACAATCCATACCC 5148
Query 41396 TAAAATCCACATGGACATG 41414
||||| || ||||| |||
Sbjct 5149 GAAAATTCAAATGGAGATG 5167
>seq9199
Length=10988
Score = 176 bits (194), Expect = 4e-39
Identities = 466/707 (66%), Gaps = 16/707 (2%)
Strand=Plus/Plus
Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302
||||| || ||| ||| || ||| || ||| || || ||||||||| || |||||
Sbjct 8511 ATTGGCGGCTTGGATAAGGAATTTAATGCAATTTTCCGGCGAGCATTTGCCTCACGTGTG 8570
Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362
|| | | || | | | || ||||| || || || || |||| || |||
Sbjct 8571 TTCCCACCTGAATTGGTGGAGCAGTTGGGCATAAAGCACGTAAAGGGTATTTTACTGTAT 8630
Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422
|| || || ||| || |||||| | || || || || || | | | | | |
Sbjct 8631 GGACCGCCAGGTACAGGTAAAACACTGATGGCACGACAAATTGGAACCATGTTGAATGCA 8690
Query 19423 CAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAA 19482
| | || || ||||| |||||||| |||| | | || ||||| || | || ||
Sbjct 8691 CGAGAACCGAAGATTGTCAATGGTCCACAAATTCTCGACAAGTATGTCGGCGAGTCCGAG 8750
Query 19483 GAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAA 19542
| |||| |||| ||||||||||| ||||| || |||||| | ||||| || || | ||
Sbjct 8751 GCAAATATACGTCGTTTGTTTGCGGACGCGGAGGAAGAAGAGAAACGCTTGGGCCCGAAC 8810
Query 19543 AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT 19602
||| |||||||| || || | || || | ||||| || ||||| | || |||
Sbjct 8811 AGTGGCTTGCACATAATTATTTTTGACGAGATTGACGCCATTTGTAAAGCTCGTGGCTCT 8870
Query 19603 GGTG------TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656
| || | ||| ||||||||||| || || |||||| | || | || | ||
Sbjct 8871 GTTGCGGGCAATAGTGGCGTACATGACACAGTCGTTAATCAATTGTTGGCCAAGATTGAT 8930
Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716
|| || | || || || |||||||| || ||||||||||| ||| ||| || | ||
Sbjct 8931 GGCGTCGAACAGCTTAACAATATTTTGGTCATTGGCATGACCAATCGACGCGATATGATT 8990
Query 19717 GACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGAT 19776
||| || | || || ||||| || || ||| || |||| ||||| | || || ||
Sbjct 8991 GACGAGGCGCTCTTGCGTCCCGGCCGTTTAGAAGTACAGATGGAAATCAGTTTGCCTAAT 9050
Query 19777 GAATGTGGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACCT 19835
||| ||||| || | ||| | || ||||| || | ||| |||||| || ||||
Sbjct 9051 GAAGAGGGACGCGTTCAGATTCTCAATATACACAC-TAAACGCATGCGTGAATTTAAC-- 9107
Query 19836 TTTAAAT-GA---CGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCG 19891
|||| || |||||| ||| | || || || || || || |||| |||||
Sbjct 9108 --AAAATCGACAGCGATGTCGATAACAAGGAGATCGCCGCATTGACGAAGAACTTTAGCG 9165
Query 19892 GCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938
|||| ||||| || || ||||| | ||||| || |||| || |||
Sbjct 9166 GCGCTGAACTAGAAGGTTTAGTACGTGCCGCTCAGTCAACAGCCATG 9212
>seq4404
Length=3800
Score = 123 bits (136), Expect = 2e-23
Identities = 194/276 (70%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 43747 AAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACA 43806
||| ||| |||| ||||| ||||||| || ||||| ||| || | || ||||| || |
Sbjct 2133 AAAGGCAGAGGCATCATTCTGGACAGTTGAGGAAGTAGATCTGTCGAAGGACTTGACAGA 2192
Query 43807 TTGGATT--GCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864
|||| | || | | || || ||||| ||||| || ||||| || |||
Sbjct 2193 TTGGGCTAAGCTTACTGATAACGAGCGT--CATTTCATATCGCACGTGTTGGCTTTCTTT 2250
Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924
||||| ||| || || || |||||||||||||| || || ||||||||||||
Sbjct 2251 GCTGCTTCCGATGGCATTGTGAATGAAAATTTGGTCGAGCGTTTCAGCCAAGAAGTTCAA 2310
Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAA 43984
| | || ||||| || || ||||| || ||||||||||| |||||| | || || |||
Sbjct 2311 GTGACTGAGGCACGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTGCACTCCGAA 2370
Query 43985 ATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||||| || || | || || || || || | ||||
Sbjct 2371 ATGTATAGCGTTTTAATCGACACCTATATAAGAGAT 2406
Score = 120 bits (132), Expect = 2e-22
Identities = 366/555 (66%), Gaps = 18/555 (3%)
Strand=Plus/Plus
Query 44042 TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG 44101
|| ||||| || || || | || || |||||| || || || ||||| || |||
Sbjct 2496 TTCAATGCAATTGAGACCATGCCCGCTGTTAAACGCAAGGCTGATTGGGCGCTCTCTTGG 2555
Query 44102 ATAAATTC-AAATGA--TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGC 44158
|| || |||| | | ||| || || || || | || ||||| | || || |||
Sbjct 2556 ATTTCATCGAAATCAGCTAATTTCGGTGAGAGAATTATTGCCTTTGCTGCGGTCGAGGGC 2615
Query 44159 ATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCT 44218
|| |||||| || |||||| |||| |||||| | |||||||| || | ||||||
Sbjct 2616 ATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGCTGAAGAAACGTGGCCTTATGCCT 2675
Query 44219 GGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCT 44278
|| || || || || ||||| ||||| ||||||||||| ||||| || || ||||||
Sbjct 2676 GGTTTAACATTCTCCAATGAATTAATTTCGCGTGATGAAGGTTTACACTGTGACTTTGCT 2735
Query 44279 -TGCT--TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGAT 44335
| || |||| | | || | | || || | || | | || |||| ||
Sbjct 2736 GTTCTTATGTTCCAT-CATTTGGTGCAG-CGTCCAACC--AAAG--AGCGTATTATTGAA 2789
Query 44336 ATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAAT 44395
|| || |||||||| || ||||| || ||||| |||| ||||| || || ||
Sbjct 2790 ATCATTTCGGAGGCAGTCAAAATAGAGCAGGAATTCTTGACCGATGCATTGCCGGTTAAC 2849
Query 44396 TTAATAGGAATGAA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGT 44452
| || || ||||| | ||| ||||| |||||||||| | | || |||||
Sbjct 2850 CTGATTGGCATGAATTGTAAAC---TGATGTCGGAATATATTGAGTTTGTCGCTGATCGC 2906
Query 44453 TTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATG 44512
|||| | ||||| || | ||| ||| | | | || || || || |||
Sbjct 2907 CTACTAGTTGAACTCGGCGTGGGCAAAATCTACAACACAAAGAATCCATTCACATTCATG 2966
Query 44513 GAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572
||| |||||| |||| ||||| || |||||||| || ||| || || ||||||||
Sbjct 2967 GAATTGATTTCGCTGGACGGCAAGACGAACTTTTTCGAGAAAAAAGTAGGCGAATATCAA 3026
Query 44573 CGAATGGGCGTCATG 44587
|| ||||| || |||
Sbjct 3027 CGCATGGGTGTAATG 3041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397361672885365
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