Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1169 233 2e-56 seq489 86.0 5e-12 >seq1169 Length=8375 Score = 233 bits (258), Expect = 2e-56 Identities = 923/1432 (64%), Gaps = 60/1432 (4%) Strand=Plus/Plus Query 130402 ACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACAT 130461 ||| || || || || ||||| || ||||| | |||||||| ||||| ||||||||||| Sbjct 818 ACTTTTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACAT 877 Query 130462 GCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCA--CATTGTTTGGTAA 130519 || ||||| || || ||| | |||| ||| || || | || | | ||| Sbjct 878 TCCAGTTTTAAGACCTGCTTTCCATGAATAAAAGTGTAT--TGAAGTCAATTTACCATAA 935 Query 130520 TTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579 || |||| || || ||| |||| || || ||| ||||| ||||| || || ||| Sbjct 936 TTTGGTTCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCT 995 Query 130580 GCAGCCATGTCGAGCATGGTTTTATTTTTCA----TCTCCCAAGCGGTCTTGTATAGATC 130635 |||||||| | | || || ||||| || ||||||| | || || |||| || Sbjct 996 GCAGCCATTTTTAT--TG--TTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTC 1051 Query 130636 CCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGG---CTATAAT 130692 || | | ||| || || |||| ||||| ||| | | ||||| | Sbjct 1052 TCTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATT 1111 Query 130693 TTCGTTGCGCATACTTTTATCGTACAA-TCCAAG-CTGTACAAGATCTTTTACCAAATGA 130750 | || |||| | ||| |||| ||||| | || || || || |||| | Sbjct 1112 ATTTTT---CATATCATCATCCCACAAATCCAATTCAGTTAAA--TCACGTAATAAATAA 1166 Query 130751 TTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAAC 130810 | |||| | |||||| || |||| | || | ||| ||| || || ||| | Sbjct 1167 TGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAG 1226 Query 130811 GGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCC 130870 |||||||| ||||| || || || | ||||| ||||||| || || ||||| ||| Sbjct 1227 GGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCT 1286 Query 130871 ACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCC 130930 || | || ||||| | | || | | | || || |||| |||| | ||||||| Sbjct 1287 ACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCC 1346 Query 130931 CATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCG 130990 || | | || ||||| || |||||| ||| ||||||| || ||||| || Sbjct 1347 CACAAATTCGTTGGTTTT---TTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATA 1403 Query 130991 GGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCC 131050 || || || ||| || ||| || | |||||| || || ||||| Sbjct 1404 GGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCT 1463 Query 131051 AAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTC 131110 || | | |||||| || ||||| |||||||| |||||| | |||| | ||| Sbjct 1464 AAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTT 1523 Query 131111 TCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACC 131170 || || ||| | ||||||||| | ||| || || | ||||| | |||| ||| | Sbjct 1524 TCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATA 1583 Query 131171 GGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATT 131230 || | |||| | || ||| | || || | || |||||| || ||||||||| Sbjct 1584 GGACGATGTCTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATT 1643 Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAAC 131290 ||||| |||| ||| || ||| |||| || || || || || ||||||||| | Sbjct 1644 ATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATA- 1702 Query 131291 GTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350 | || ||||| ||||| ||||| || || |||| ||| || || || Sbjct 1703 -TTTTTTTTCCGAGG-ACACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCA 1760 Query 131351 GTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTG 131410 |||| || | |||| | |||||||| | ||| |||||||||| || |||||| Sbjct 1761 ATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTG 1820 Query 131411 CCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGT 131469 || | ||||||||| |||||||| ||| ||||| || || ||| ||| || || || Sbjct 1821 CCAACATTTTGTTGGTTGCTTTTTCTATT-ACATGAATCTTTAAACAACATATATGGAGT 1879 Query 131470 GCCCGTTTCGACTTGAGTTTCAATAAT--GTATCGAAAGAGTTTTCGAGCAGACAATTGA 131527 ||| ||||| ||||||| |||||| || | | |||||| || | || || | Sbjct 1880 GCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATT--GTGC-----TTTAA 1932 Query 131528 TATTTGTATTGGCCGCG------TTTTTCGTAATTTTCGTACAACGTTTCAAAGT--TTT 131579 | ||| || | | |||| || ||| || ||||| || ||| ||||||| | | Sbjct 1933 TTTTTCTACTTG-CGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCA 1991 Query 131580 GGCCAAAC-----GAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACAC 131634 |||||| ||| | ||| || |||| |||||||| || |||||| | Sbjct 1992 CCCCAAACATCATGAA--GGCCA-----GGGCATTTATGAGGACACATAAGTGACCACTC 2044 Query 131635 GCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATC 131694 | | | || ||||| |||||||| | || || | ||| | ||||| || | ||| Sbjct 2045 TCGATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATC 2104 Query 131695 TCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTC 131754 | |||| | | ||||| | || || ||||||| | || || || || |||||||| Sbjct 2105 ACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTC 2164 Query 131755 CGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCGCCT 131806 |||||||| || || ||||| | || | ||| || | |||||| ||| Sbjct 2165 TGCATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCT 2216 >seq489 Length=77466 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||||||| | || || || |||||||| ||||||||| Sbjct 4394 CCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 4453 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| || || || ||||| | || ||||||||||| || || || Sbjct 4454 AGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGA 4513 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || |||||| || | | || | ||||| | | ||||| Sbjct 4514 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACC 4573 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || || |||||||| || || || ||||| Sbjct 4574 TCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCAT 4620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424833551513976