Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 233 2e-56
seq489 86.0 5e-12
>seq1169
Length=8375
Score = 233 bits (258), Expect = 2e-56
Identities = 923/1432 (64%), Gaps = 60/1432 (4%)
Strand=Plus/Plus
Query 130402 ACTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACAT 130461
||| || || || || ||||| || ||||| | |||||||| ||||| |||||||||||
Sbjct 818 ACTTTTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACAT 877
Query 130462 GCCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCA--CATTGTTTGGTAA 130519
|| ||||| || || ||| | |||| ||| || || | || | | |||
Sbjct 878 TCCAGTTTTAAGACCTGCTTTCCATGAATAAAAGTGTAT--TGAAGTCAATTTACCATAA 935
Query 130520 TTGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579
|| |||| || || ||| |||| || || ||| ||||| ||||| || || |||
Sbjct 936 TTTGGTTCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCT 995
Query 130580 GCAGCCATGTCGAGCATGGTTTTATTTTTCA----TCTCCCAAGCGGTCTTGTATAGATC 130635
|||||||| | | || || ||||| || ||||||| | || || |||| ||
Sbjct 996 GCAGCCATTTTTAT--TG--TTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTC 1051
Query 130636 CCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGG---CTATAAT 130692
|| | | ||| || || |||| ||||| ||| | | ||||| |
Sbjct 1052 TCTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATT 1111
Query 130693 TTCGTTGCGCATACTTTTATCGTACAA-TCCAAG-CTGTACAAGATCTTTTACCAAATGA 130750
| || |||| | ||| |||| ||||| | || || || || |||| |
Sbjct 1112 ATTTTT---CATATCATCATCCCACAAATCCAATTCAGTTAAA--TCACGTAATAAATAA 1166
Query 130751 TTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAAC 130810
| |||| | |||||| || |||| | || | ||| ||| || || ||| |
Sbjct 1167 TGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAG 1226
Query 130811 GGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCC 130870
|||||||| ||||| || || || | ||||| ||||||| || || ||||| |||
Sbjct 1227 GGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCT 1286
Query 130871 ACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCC 130930
|| | || ||||| | | || | | | || || |||| |||| | |||||||
Sbjct 1287 ACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCC 1346
Query 130931 CATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCG 130990
|| | | || ||||| || |||||| ||| ||||||| || ||||| ||
Sbjct 1347 CACAAATTCGTTGGTTTT---TTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATA 1403
Query 130991 GGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCC 131050
|| || || ||| || ||| || | |||||| || || |||||
Sbjct 1404 GGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCT 1463
Query 131051 AAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTC 131110
|| | | |||||| || ||||| |||||||| |||||| | |||| | |||
Sbjct 1464 AAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTT 1523
Query 131111 TCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACC 131170
|| || ||| | ||||||||| | ||| || || | ||||| | |||| ||| |
Sbjct 1524 TCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATA 1583
Query 131171 GGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATT 131230
|| | |||| | || ||| | || || | || |||||| || |||||||||
Sbjct 1584 GGACGATGTCTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATT 1643
Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAAC 131290
||||| |||| ||| || ||| |||| || || || || || ||||||||| |
Sbjct 1644 ATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATA- 1702
Query 131291 GTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350
| || ||||| ||||| ||||| || || |||| ||| || || ||
Sbjct 1703 -TTTTTTTTCCGAGG-ACACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCA 1760
Query 131351 GTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTG 131410
|||| || | |||| | |||||||| | ||| |||||||||| || ||||||
Sbjct 1761 ATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTG 1820
Query 131411 CCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGT 131469
|| | ||||||||| |||||||| ||| ||||| || || ||| ||| || || ||
Sbjct 1821 CCAACATTTTGTTGGTTGCTTTTTCTATT-ACATGAATCTTTAAACAACATATATGGAGT 1879
Query 131470 GCCCGTTTCGACTTGAGTTTCAATAAT--GTATCGAAAGAGTTTTCGAGCAGACAATTGA 131527
||| ||||| ||||||| |||||| || | | |||||| || | || || |
Sbjct 1880 GCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATT--GTGC-----TTTAA 1932
Query 131528 TATTTGTATTGGCCGCG------TTTTTCGTAATTTTCGTACAACGTTTCAAAGT--TTT 131579
| ||| || | | |||| || ||| || ||||| || ||| ||||||| | |
Sbjct 1933 TTTTTCTACTTG-CGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCA 1991
Query 131580 GGCCAAAC-----GAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACAC 131634
|||||| ||| | ||| || |||| |||||||| || |||||| |
Sbjct 1992 CCCCAAACATCATGAA--GGCCA-----GGGCATTTATGAGGACACATAAGTGACCACTC 2044
Query 131635 GCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATC 131694
| | | || ||||| |||||||| | || || | ||| | ||||| || | |||
Sbjct 2045 TCGATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATC 2104
Query 131695 TCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTC 131754
| |||| | | ||||| | || || ||||||| | || || || || ||||||||
Sbjct 2105 ACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTC 2164
Query 131755 CGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCGCCT 131806
|||||||| || || ||||| | || | ||| || | |||||| |||
Sbjct 2165 TGCATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCT 2216
>seq489
Length=77466
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | ||||||||| | || || || |||||||| |||||||||
Sbjct 4394 CCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 4453
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | ||||| || || || ||||| | || ||||||||||| || || ||
Sbjct 4454 AGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGA 4513
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||||| || |||||| || | | || | ||||| | | |||||
Sbjct 4514 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACC 4573
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | || || || |||||||| || || || |||||
Sbjct 4574 TCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCAT 4620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424833551513976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |