Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11998 91.5 2e-13 seq10147 86.0 8e-12 >seq11998 Length=46925 Score = 91.5 bits (100), Expect = 2e-13 Identities = 251/380 (66%), Gaps = 21/380 (6%) Strand=Plus/Minus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| |||||||| || |||||||| | | ||| ||| | ||||| || |||| Sbjct 37444 CTTGACGATCAAATCGTCCCGGGCGCAACAAAGCGCTATCCAAAATATCTGGACGGTTAG 37385 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTA 11561 | ||||||| | || || || | |||| ||||| |||||||| || | | Sbjct 37384 TTGCCGCAA---CGACTATTACACCCAAATTGGTTTCAAAACCATCCATTTCCACTAACA 37328 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCA------GCACTGC 11615 ||| || | |||||| || | ||| ||||| | ||||||| |||| | Sbjct 37327 TTTGGTTCAATGTTTGCTCACGCTCGTCATTACC------ACCACCATGTCCTGCACCAC 37274 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 |||| || || || |||||||||||||| || | ||| || || ||||| | Sbjct 37273 GTTGGCGCCCTACGGCGTCAATCTCATCAATAAAAATAATGCAGGGAGCATTTTTTTTAG 37214 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 || | ||||| | || || || | | || || || ||||||||||| |||||||||| Sbjct 37213 CGTTCTCAAACATGTCACGTACACGTGCCGCTCCAACGCCAACAAACATTTCCACAAAGT 37154 Query 11736 TTGCGGCAG-AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGG 11794 | | ||| | ||| || || || || |||| |||||| || |||| | || | Sbjct 37153 CAGAGCCAGAAATACT-GAAAAACGGAACCTTTGCTTCACCAGCAATGGATTTTGCCAAC 37095 Query 11795 AGGGTCTTTCCCGTACCTGG 11814 || || || || || ||||| Sbjct 37094 AGTGTTTTCCCTGTCCCTGG 37075 >seq10147 Length=26039 Score = 86.0 bits (94), Expect = 8e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 |||||||| || | || || |||||||| ||||| | |||||||| | |||||||| Sbjct 13079 TCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATGTTA 13020 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || ||||| | ||| | ||||| ||||| || || || | | | || |||||||| Sbjct 13019 TTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTGGA-GTGAGACTTCACC 12961 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTT 181975 ||| || || |||||| | || || || | | | ||| |||||||| || Sbjct 12960 GTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTT 12910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627879129160800