Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq11998 91.5 2e-13
seq10147 86.0 8e-12
>seq11998
Length=46925
Score = 91.5 bits (100), Expect = 2e-13
Identities = 251/380 (66%), Gaps = 21/380 (6%)
Strand=Plus/Minus
Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504
|||| |||||||| || |||||||| | | ||| ||| | ||||| || ||||
Sbjct 37444 CTTGACGATCAAATCGTCCCGGGCGCAACAAAGCGCTATCCAAAATATCTGGACGGTTAG 37385
Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTA 11561
| ||||||| | || || || | |||| ||||| |||||||| || | |
Sbjct 37384 TTGCCGCAA---CGACTATTACACCCAAATTGGTTTCAAAACCATCCATTTCCACTAACA 37328
Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCA------GCACTGC 11615
||| || | |||||| || | ||| ||||| | ||||||| |||| |
Sbjct 37327 TTTGGTTCAATGTTTGCTCACGCTCGTCATTACC------ACCACCATGTCCTGCACCAC 37274
Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675
|||| || || || |||||||||||||| || | ||| || || ||||| |
Sbjct 37273 GTTGGCGCCCTACGGCGTCAATCTCATCAATAAAAATAATGCAGGGAGCATTTTTTTTAG 37214
Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735
|| | ||||| | || || || | | || || || ||||||||||| ||||||||||
Sbjct 37213 CGTTCTCAAACATGTCACGTACACGTGCCGCTCCAACGCCAACAAACATTTCCACAAAGT 37154
Query 11736 TTGCGGCAG-AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGG 11794
| | ||| | ||| || || || || |||| |||||| || |||| | || |
Sbjct 37153 CAGAGCCAGAAATACT-GAAAAACGGAACCTTTGCTTCACCAGCAATGGATTTTGCCAAC 37095
Query 11795 AGGGTCTTTCCCGTACCTGG 11814
|| || || || || |||||
Sbjct 37094 AGTGTTTTCCCTGTCCCTGG 37075
>seq10147
Length=26039
Score = 86.0 bits (94), Expect = 8e-12
Identities = 123/171 (72%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865
|||||||| || | || || |||||||| ||||| | |||||||| | ||||||||
Sbjct 13079 TCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATGTTA 13020
Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924
|| ||||| | ||| | ||||| ||||| || || || | | | || ||||||||
Sbjct 13019 TTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTGGA-GTGAGACTTCACC 12961
Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTT 181975
||| || || |||||| | || || || | | | ||| |||||||| ||
Sbjct 12960 GTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTT 12910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627879129160800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |