Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10147 84.2 3e-11 seq11998 82.4 9e-11 >seq10147 Length=26039 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 |||||| || || | || || || ||||| ||||| | |||||||| | ||| || || Sbjct 13080 ATCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATGTT 13021 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 || ||||| | ||| | ||||| || ||||| || || | ||| |||||||||| Sbjct 13020 ATTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTG-GAGTGAGACTTCAC 12962 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTC 179240 ||||||| || || ||| | || ||||| | | | ||| || ||||| || | ||| Sbjct 12961 CGTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTTGACCTC 12904 >seq11998 Length=46925 Score = 82.4 bits (90), Expect = 9e-11 Identities = 294/456 (64%), Gaps = 8/456 (2%) Strand=Plus/Minus Query 14006 TGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTT-ACG 14064 || ||||||||||| | || ||||| ||| |||| || || | | ||| ||| Sbjct 37496 TGCACACCCAAAATTTGTTCACGACCTTTGACATCAGGTAACGATACA-TAAACTTGACG 37438 Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || || ||||| | | ||| || | ||||| ||||| || ||||| Sbjct 37437 ATCAAATCGTCCCGGGCGCAACAAAGCGCTATCCAAAATATCTGGACGGTTAGTTGCCGC 37378 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | ||| | | ||| | | | ||||| |||||||| || || | ||| || | Sbjct 37377 AACGACTATTACACCCAAATTGGTTTCAAAACCATCCATTTCCACTAACATTTGGTTCAA 37318 Query 14185 GGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCGAC 14241 ||||| || || || ||||| || |||| || |||| ||||| || || Sbjct 37317 TGTTTGCTCACGCTCGTCATTACCACC---ACCATGTCCTGCACCACGTTGGCGCCCTAC 37261 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGAT 14301 ||||||||| ||||| || |||| || || || ||||| || ||||| || Sbjct 37260 GGCGTCAATCTCATCAATAAAAATAATGCAGGGAGCATTTTTTTTAGCGTTCTCAAACAT 37201 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 14361 || || || | || || || || |||||||| |||||||| | | | | ||| Sbjct 37200 GTCACGTACACGTGCCGCTCCAACGCCAACAAACATTTCCACAAAGTCAGAGCCAGAAAT 37141 Query 14362 TTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 14421 || || || || || | |||||| || |||| | || | || || ||||| || Sbjct 37140 ACTGAAAAACGGAACCTTTGCTTCACCAGCAATGGATTTTGCCAACAGTGTTTTCCCTGT 37081 Query 14422 CCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGAT 14457 ||||||| ||| | || | ||| |||||||| Sbjct 37080 CCCTGGTGGGCCTACTAGCAATAAACCGCGTGGGAT 37045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618284665141880