Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq10147 84.2 3e-11
seq11998 82.4 9e-11
>seq10147
Length=26039
Score = 84.2 bits (92), Expect = 3e-11
Identities = 127/178 (71%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123
|||||| || || | || || || ||||| ||||| | |||||||| | ||| || ||
Sbjct 13080 ATCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATGTT 13021
Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182
|| ||||| | ||| | ||||| || ||||| || || | ||| ||||||||||
Sbjct 13020 ATTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTG-GAGTGAGACTTCAC 12962
Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTC 179240
||||||| || || ||| | || ||||| | | | ||| || ||||| || | |||
Sbjct 12961 CGTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTTGACCTC 12904
>seq11998
Length=46925
Score = 82.4 bits (90), Expect = 9e-11
Identities = 294/456 (64%), Gaps = 8/456 (2%)
Strand=Plus/Minus
Query 14006 TGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTT-ACG 14064
|| ||||||||||| | || ||||| ||| |||| || || | | ||| |||
Sbjct 37496 TGCACACCCAAAATTTGTTCACGACCTTTGACATCAGGTAACGATACA-TAAACTTGACG 37438
Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124
|||||| || || ||||| | | ||| || | ||||| ||||| || |||||
Sbjct 37437 ATCAAATCGTCCCGGGCGCAACAAAGCGCTATCCAAAATATCTGGACGGTTAGTTGCCGC 37378
Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184
| ||| | | ||| | | | ||||| |||||||| || || | ||| || |
Sbjct 37377 AACGACTATTACACCCAAATTGGTTTCAAAACCATCCATTTCCACTAACATTTGGTTCAA 37318
Query 14185 GGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCGAC 14241
||||| || || || ||||| || |||| || |||| ||||| || ||
Sbjct 37317 TGTTTGCTCACGCTCGTCATTACCACC---ACCATGTCCTGCACCACGTTGGCGCCCTAC 37261
Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGAT 14301
||||||||| ||||| || |||| || || || ||||| || ||||| ||
Sbjct 37260 GGCGTCAATCTCATCAATAAAAATAATGCAGGGAGCATTTTTTTTAGCGTTCTCAAACAT 37201
Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 14361
|| || || | || || || || |||||||| |||||||| | | | | |||
Sbjct 37200 GTCACGTACACGTGCCGCTCCAACGCCAACAAACATTTCCACAAAGTCAGAGCCAGAAAT 37141
Query 14362 TTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 14421
|| || || || || | |||||| || |||| | || | || || ||||| ||
Sbjct 37140 ACTGAAAAACGGAACCTTTGCTTCACCAGCAATGGATTTTGCCAACAGTGTTTTCCCTGT 37081
Query 14422 CCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGAT 14457
||||||| ||| | || | ||| ||||||||
Sbjct 37080 CCCTGGTGGGCCTACTAGCAATAAACCGCGTGGGAT 37045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618284665141880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |