Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq11998 96.9 4e-15
seq10147 95.1 1e-14
>seq11998
Length=46925
Score = 96.9 bits (106), Expect = 4e-15
Identities = 255/389 (66%), Gaps = 18/389 (5%)
Strand=Plus/Minus
Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670
|||||||||||||| || || | |||||| | ||||| || || || ||||| |
Sbjct 37352 TCAAAACCATCCATTTCCACTAACATTTGGTTCAATGTTTGCTCACGCTCGTCATTACC- 37294
Query 9671 GGCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9724
||||||| |||| ||||| || ||||| |||||||||||||| ||
Sbjct 37293 -----ACCACCATGTCCTGCACCACGTTGGCGCCCTACGGCGTCAATCTCATCAATAAAA 37239
Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784
| ||||| || ||||| |||| ||||| | || |||||||| || ||
Sbjct 37238 ATAATGCAGGGAGCATTTTTTTTAGCGTTCTCAAACATGTCACGTACACGTGCCGCTCCA 37179
Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844
|| ||||||||||| |||||||||| | | | ||| || || || || || | |
Sbjct 37178 ACGCCAACAAACATTTCCACAAAGTCAGAGCCAGAAATACTGAAAAACGGAACCTTTGCT 37119
Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904
||||| ||||||| | || | || || || || || ||||| || | || |
Sbjct 37118 TCACCAGCAATGGATTTTGCCAACAGTGTTTTCCCTGTCCCTGGTGGGCCTACTAGCAAT 37059
Query 9905 GCACCTCGTGGAATCTTGGCGCCA---CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAA 9961
||| ||||| || | ||||| | | ||| | ||| || | || | ||||
Sbjct 37058 AAACCGCGTGGGATACGGCCGCCAAGGCGTTGAAACT---TCTGCGGATCTTTTAAAAAA 37002
Query 9962 TCCACAATTTCTTCCAATTCATCTTTGGC 9990
||||| | ||||| || ||| ||||| ||
Sbjct 37001 TCCACGACTTCTTTCACTTCTTCTTTAGC 36973
>seq10147
Length=26039
Score = 95.1 bits (104), Expect = 1e-14
Identities = 238/359 (66%), Gaps = 2/359 (1%)
Strand=Plus/Minus
Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335
|||| || || ||||| |||| ||||||||| | ||||| || | |||| || ||
Sbjct 13261 AACCAGTGCCAATACCTTCTGCACCGTTCACCAACACCATCGGTATAATTGGTATATACC 13202
Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395
| | |||||||||| | | ||||||||| || || || | |||||||| ||
Sbjct 13201 AATTTGGCTCAATGCGCTGGCCATCGTCAACCTGGTATGACAGCAAAGGATCATCCAACG 13142
Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455
| | ||| || || | | | | | || || ||||| | | | ||
Sbjct 13141 GGTGAAAAATAAGACGTGTAAGCGGCGACATCAAAGTGAAAATATAACGAGCACTGG-CG 13083
Query 168456 CA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514
|| || ||||| || | || || |||||||||||||| | ||||||||| | ||| ||
Sbjct 13082 CAATCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATG 13023
Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574
|| || ||||| | ||| | ||||| || ||||| || ||| |||||||||
Sbjct 13022 TTATTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTGGAGTGAGACTTCA 12963
Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633
||||| || || || | ||||||| || | | | ||| || |||||||| | |||
Sbjct 12962 CCGTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTTGACCTC 12904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583118827030520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |