Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11998 96.9 4e-15 seq10147 95.1 1e-14 >seq11998 Length=46925 Score = 96.9 bits (106), Expect = 4e-15 Identities = 255/389 (66%), Gaps = 18/389 (5%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 |||||||||||||| || || | |||||| | ||||| || || || ||||| | Sbjct 37352 TCAAAACCATCCATTTCCACTAACATTTGGTTCAATGTTTGCTCACGCTCGTCATTACC- 37294 Query 9671 GGCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9724 ||||||| |||| ||||| || ||||| |||||||||||||| || Sbjct 37293 -----ACCACCATGTCCTGCACCACGTTGGCGCCCTACGGCGTCAATCTCATCAATAAAA 37239 Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 | ||||| || ||||| |||| ||||| | || |||||||| || || Sbjct 37238 ATAATGCAGGGAGCATTTTTTTTAGCGTTCTCAAACATGTCACGTACACGTGCCGCTCCA 37179 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 || ||||||||||| |||||||||| | | | ||| || || || || || | | Sbjct 37178 ACGCCAACAAACATTTCCACAAAGTCAGAGCCAGAAATACTGAAAAACGGAACCTTTGCT 37119 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| ||||||| | || | || || || || || ||||| || | || | Sbjct 37118 TCACCAGCAATGGATTTTGCCAACAGTGTTTTCCCTGTCCCTGGTGGGCCTACTAGCAAT 37059 Query 9905 GCACCTCGTGGAATCTTGGCGCCA---CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAA 9961 ||| ||||| || | ||||| | | ||| | ||| || | || | |||| Sbjct 37058 AAACCGCGTGGGATACGGCCGCCAAGGCGTTGAAACT---TCTGCGGATCTTTTAAAAAA 37002 Query 9962 TCCACAATTTCTTCCAATTCATCTTTGGC 9990 ||||| | ||||| || ||| ||||| || Sbjct 37001 TCCACGACTTCTTTCACTTCTTCTTTAGC 36973 >seq10147 Length=26039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 238/359 (66%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| || || ||||| |||| ||||||||| | ||||| || | |||| || || Sbjct 13261 AACCAGTGCCAATACCTTCTGCACCGTTCACCAACACCATCGGTATAATTGGTATATACC 13202 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | | |||||||||| | | ||||||||| || || || | |||||||| || Sbjct 13201 AATTTGGCTCAATGCGCTGGCCATCGTCAACCTGGTATGACAGCAAAGGATCATCCAACG 13142 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | | ||| || || | | | | | || || ||||| | | | || Sbjct 13141 GGTGAAAAATAAGACGTGTAAGCGGCGACATCAAAGTGAAAATATAACGAGCACTGG-CG 13083 Query 168456 CA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 || || ||||| || | || || |||||||||||||| | ||||||||| | ||| || Sbjct 13082 CAATCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATG 13023 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 || || ||||| | ||| | ||||| || ||||| || ||| ||||||||| Sbjct 13022 TTATTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTGGAGTGAGACTTCA 12963 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 168633 ||||| || || || | ||||||| || | | | ||| || |||||||| | ||| Sbjct 12962 CCGTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTTGACCTC 12904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583118827030520