Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17788 154 2e-32 seq10147 111 2e-19 >seq17788 Length=7208 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || ||||| || ||||||||||| || | Sbjct 2198 ATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCG 2257 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || ||||||||||| || |||||||||||||| || Sbjct 2258 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 2317 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || |||||||| |||||||| || || | || |||| ||| || || | || |||||| Sbjct 2318 CAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAAT 2377 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| ||| | ||| | || ||||| ||||| |||||| Sbjct 2378 ATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCGTGGTGGA 2425 >seq10147 Length=26039 Score = 111 bits (122), Expect = 2e-19 Identities = 237/352 (67%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 32053 AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCG 32112 || ||||| || |||| || | ||||||||| | || ||||| ||||| || | Sbjct 12910 AAAGTGGCACAATTGTCCGGTTCAGTGGCAGAGATGTCAGCATATCATCACGGTGAAGTC 12969 Query 32113 TCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAAC 32172 || ||||| || ||||| || | || || |||||||||||| | |||||| | || Sbjct 12970 TCACTCCAAATGACTATTGTTAATTTGGCACAAAACTTTGTCGGTTCGAATAACATTAAT 13029 Query 32173 TTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGC 32232 || || ||||| || |||||||| ||||| || | || || || ||| || || Sbjct 13030 TTGCTTGAGCCGCGCGGTCAGTTTGGTACCCGACTTGTTGGCGGTAAAGATTGCGCCAGT 13089 Query 32233 TCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGG 32290 | ||||| || ||||| | |||| ||| || || ||||| |||||| || Sbjct 13090 GCTCGTTATATTTTCACTTTGATGTCGCCGCTT--ACACGTCTTATTTTTCACCCGTTGG 13147 Query 32291 ACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACA 32350 | ||| | |||| ||| | |||| || || ||||| | ||||| | || | Sbjct 13148 ATGATCCTTTGCTGTCATACCAGGTTGACGATGGCCAGCGCATTGAGCCAAATTGGTATA 13207 Query 32351 GTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 || | | |||||| | |||||||||||||||||||| || || || || Sbjct 13208 TACCAATTATACCGATGGTGTTGGTGAACGGTGCAGAAGGTATTGGCACTGG 13259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570171579319760