Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq12041 197 1e-45
seq489 167 2e-36
seq17788 159 3e-34
>seq12041
Length=12732
Score = 197 bits (218), Expect = 1e-45
Identities = 323/457 (71%), Gaps = 10/457 (2%)
Strand=Plus/Minus
Query 135308 GTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAA 135367
|| ||||| |||||||| || || || ||||||| || |||||||||||| || || ||
Sbjct 5213 GTTCGCCGTGAATTGGCAGATAACTTCTGTTATTTCAATAAACATTATGATAGCCTAAAA 5154
Query 135368 GG--TGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACT 135425
|| || |||| | ||||| | ||||| | | | ||| | ||| | ||
Sbjct 5153 GGACTG-TCCG-CGTGGGCATACCAAACCCTTAATGACCACCGCAAGGATAAACGT-ACA 5097
Query 135426 TTTGT-TACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCG 135484
| || |||||| ||| | | || |||| || || || || ||||||||
Sbjct 5096 TCAGTATACACGTTAGAGGAGTTTGAGTCAGCGCGAACTCACGATGATTTATGGAACGCT 5037
Query 135485 GCACAACGGCAGCTT--AAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGG 135542
||||| ||| ||| |||||| || |||||||| || ||| |||||||||||||||
Sbjct 5036 GCACAGTTGCAACTTGTAAGCGA--AGCTAAAATGCATGGCTTTTTGCGCATGTATTGGG 4979
Query 135543 CAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTT 135602
||||||||||| | |||||| | | | |||| | |||| | || |||| ||| |
Sbjct 4978 CAAAAAAGATACTTGAATGGGCAGAAACGCCGGAGCAGGCTTTGGAATACGCTATACTGC 4919
Query 135603 TTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGT 135662
|||||||| | || || ||||||||| | ||| | ||||| ||||| ||||| |||||||
Sbjct 4918 TTAATGATAAGTATAGCTTAGATGGAAGGGATCCGAATGGTTACGTGGGTTGCATGTGGT 4859
Query 135663 CTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCT 135722
| ||| | ||| |||| || ||||||||| ||| | || |||||||| | ||||
Sbjct 4858 CCATTGGTGGTATACATGACCAAGGATGGGCCGAGAGGCCTGTCTTTGGCAAAGTGCGCT 4799
Query 135723 ATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759
||||||| ||| | || |||| |||| || ||||
Sbjct 4798 ATATGAATTATCAGGGATGTAAGCGAAAGTTCGATGT 4762
>seq489
Length=77466
Score = 167 bits (184), Expect = 2e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| || |||||||| ||||| ||| | ||||| | || || || || ||
Sbjct 4620 ATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCTTCT 4561
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || || |||||||| ||||| || || || |||
Sbjct 4560 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAA 4501
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||||| ||| ||||||| | || ||||||| ||||||
Sbjct 4500 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTACAAC 4441
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||||||||||||| | |||||||| | ||| |||| ||||| ||
Sbjct 4440 ATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGGTAT 4391
>seq17788
Length=7208
Score = 159 bits (176), Expect = 3e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| ||||| || || || ||| | || |||||||| || ||||| ||
Sbjct 2197 CATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTC 2256
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | |||||| || ||||| ||||||||||| || || || |||||
Sbjct 2257 GGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCA 2316
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| ||| |||| | || |||||||| |||||||| || || | || ||||| ||
Sbjct 2317 ACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAA 2376
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || || || ||||| || |||||||||||||| | || |||||
Sbjct 2377 TATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCGTGGTGG 2424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434812535424960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |