Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq12041 197 1e-45 seq489 167 2e-36 seq17788 159 3e-34 >seq12041 Length=12732 Score = 197 bits (218), Expect = 1e-45 Identities = 323/457 (71%), Gaps = 10/457 (2%) Strand=Plus/Minus Query 135308 GTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAA 135367 || ||||| |||||||| || || || ||||||| || |||||||||||| || || || Sbjct 5213 GTTCGCCGTGAATTGGCAGATAACTTCTGTTATTTCAATAAACATTATGATAGCCTAAAA 5154 Query 135368 GG--TGCTCCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACT 135425 || || |||| | ||||| | ||||| | | | ||| | ||| | || Sbjct 5153 GGACTG-TCCG-CGTGGGCATACCAAACCCTTAATGACCACCGCAAGGATAAACGT-ACA 5097 Query 135426 TTTGT-TACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCG 135484 | || |||||| ||| | | || |||| || || || || |||||||| Sbjct 5096 TCAGTATACACGTTAGAGGAGTTTGAGTCAGCGCGAACTCACGATGATTTATGGAACGCT 5037 Query 135485 GCACAACGGCAGCTT--AAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGG 135542 ||||| ||| ||| |||||| || |||||||| || ||| ||||||||||||||| Sbjct 5036 GCACAGTTGCAACTTGTAAGCGA--AGCTAAAATGCATGGCTTTTTGCGCATGTATTGGG 4979 Query 135543 CAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTT 135602 ||||||||||| | |||||| | | | |||| | |||| | || |||| ||| | Sbjct 4978 CAAAAAAGATACTTGAATGGGCAGAAACGCCGGAGCAGGCTTTGGAATACGCTATACTGC 4919 Query 135603 TTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGT 135662 |||||||| | || || ||||||||| | ||| | ||||| ||||| ||||| ||||||| Sbjct 4918 TTAATGATAAGTATAGCTTAGATGGAAGGGATCCGAATGGTTACGTGGGTTGCATGTGGT 4859 Query 135663 CTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCT 135722 | ||| | ||| |||| || ||||||||| ||| | || |||||||| | |||| Sbjct 4858 CCATTGGTGGTATACATGACCAAGGATGGGCCGAGAGGCCTGTCTTTGGCAAAGTGCGCT 4799 Query 135723 ATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 ||||||| ||| | || |||| |||| || |||| Sbjct 4798 ATATGAATTATCAGGGATGTAAGCGAAAGTTCGATGT 4762 >seq489 Length=77466 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || |||||||| ||||| ||| | ||||| | || || || || || Sbjct 4620 ATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCTTCT 4561 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || |||||||| ||||| || || || ||| Sbjct 4560 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAA 4501 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| ||| ||||||| | || ||||||| |||||| Sbjct 4500 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTACAAC 4441 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||||||| | |||||||| | ||| |||| ||||| || Sbjct 4440 ATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGGTAT 4391 >seq17788 Length=7208 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || ||| | || |||||||| || ||||| || Sbjct 2197 CATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTC 2256 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 2257 GGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCA 2316 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| |||| | || |||||||| |||||||| || || | || ||||| || Sbjct 2317 ACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAA 2376 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || ||||| || |||||||||||||| | || ||||| Sbjct 2377 TATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCGTGGTGG 2424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434812535424960