Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq17463 176 2e-39 seq12138 86.0 2e-12 >seq17463 Length=6653 Score = 176 bits (194), Expect = 2e-39 Identities = 144/174 (83%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 16832 AAGCACGTTGGCATCATCATGCCACGTAAA-GAGGATTAGTTATGCTTCAAAAGCTAGAC 16890 |||||||| ||| |||||| ||| ||| || ||||| | | ||| ||||| | |||||| Sbjct 3672 AAGCACGTCGGCGTCATCACGCCGCGTCAATGAGGACTTGGGATGTTTCAACAACTAGAC 3613 Query 16891 GTCGCAGACAGCGTGCGTCGCGAGCTGTCTCCCCGTACCGCGCGTAAACACAAAGCAGAG 16950 ||||||||||||||| | |||| || | ||||||||||||| ||||||||||| ||| Sbjct 3612 ACCGCAGACAGCGTGCGCCTCGAGGTGGCACCCCGTACCGCGCAGAAACACAAAGCCGAG 3553 Query 16951 TTCGGCCAGTTCATGACGCCTTCTGGCGTGGCCCGTTTTATGGCCTCCTTGTTT 17004 |||||| |||||||||||||||| |||||||||| |||||||| ||| || || Sbjct 3552 TTCGGCTAGTTCATGACGCCTTCGAGCGTGGCCCGCTTTATGGCGTCCCTGATT 3499 >seq12138 Length=25834 Score = 86.0 bits (94), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 20823 TTATGACCGGGCGTGCGGCTAATACAATACCAGCAATGGGAATATGCCCGCCGACTACTT 20882 ||||| ||||| ||| ||||||||||| ||| | || |||| |||||| ||| | Sbjct 7318 TTATGGCCGGGTGTGAGGCTAATACAAGACCCTTAGGGGAAATACGCCCGCGGACCTATG 7377 Query 20883 GCGGTTTTGAGCGCCCGGTCACCCTCTCAAAAGGGGTAAA----TCAAAATATCAAGTAG 20938 | ||||||||| ||||| | ||||||||||||||| ||| |||||| |||| ||| Sbjct 7378 ACCGTTTTGAGCACCCGGCCGCCCTCTCAAAAGGGGCAAACTTCTCAAAAAATCA--TAG 7435 Query 20939 GA 20940 || Sbjct 7436 GA 7437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195145263805922