Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq1420 91.5 1e-13 >seq1420 Length=85926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 265/402 (66%), Gaps = 7/402 (2%) Strand=Plus/Plus Query 125926 ATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAATCTT 125985 |||| || | || || || ||||||| ||| || ||| || || || | ||||| | Sbjct 3742 ATACTGCCACGGGAGCCTTGATAGCAGCGTGATGTTGATAGTTAATAAAATTGAAATCCT 3801 Query 125986 CATAATTAATATCAAAAATTGATTTATCTGTA---TTAATTTTTAATTGAGGTGGTAGAT 126042 || | ||| || ||||||||||| | | || ||||||| |||| ||| | ||| Sbjct 3802 CAAATTTATAATTAAAAATTGATTCAGGTTTACGTTTAATTTCTAATGCAGGAAGAGGAT 3861 Query 126043 AACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCA- 126101 | | || ||| ||| |||| | ||| ||||||| |||||| || ||| Sbjct 3862 ACGCAAATCGACTTAACTGTAATTGTACTTGATCGCTATGATTTTCATAAATGTG-GCAG 3920 Query 126102 TCTCCAAATGTATGAATGAATTCACCCACCT-CAAGTCCACATTCTTTTGCAACAAGATG 126160 || ||| || || || |||||||| | ||| | | || | |||||| | || Sbjct 3921 TCGCCACCAGTCCAGATAAAGTCACCCACTTGCAAATT-AGTTTGCTGTGCAACCATGTG 3979 Query 126161 TGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCT 126220 ||| | ||| ||||| || |||||||| || || ||||||||||| || || ||||||| Sbjct 3980 TGTTAATAATGCATAGCTGGCAATATTAAACGGCACACCTAAAAACATGTCTGCACTTCG 4039 Query 126221 TTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCA 126280 || || | || || |||| || | |||||||| ||||| | || || || Sbjct 4040 CTGGTAAAGCTGGCAGCTTAACGCTCCATTAGCAACGTAAAACTGAAATAATGCATGACA 4099 Query 126281 AGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGC 126322 || || |||||| ||| | || | | |||||| || Sbjct 4100 TGGCATCAACGCCATTTGATCCAGTTGTGAAACATTCCAAGC 4141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408501428490911