Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6120 113 4e-20 >seq6120 Length=7451 Score = 113 bits (124), Expect = 4e-20 Identities = 277/415 (67%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 34391 GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGG 34450 |||| ||| | || ||||| || || || || ||| | |||||||| || | ||| | Sbjct 4610 GAGGCCGATCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAATATAAG 4669 Query 34451 GGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC 34510 |||| | || ||| | ||||| || | ||||| || || | ||||| || ||| Sbjct 4670 ACCTGCGACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATTGAAACC 4729 Query 34511 TTGAAGCGGAACCCTGATG-ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | | || || | | | | | |||| | |||| ||| |||||||| |||| | Sbjct 4730 AT-ACGCACAAATCCAACGGATCGTCGGATTATTATGTCCGCTTGGAACCCTTTGGATAT 4788 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAAT---- 34624 || | |||||| | || || ||||| || ||| ||||||||||| | | Sbjct 4789 ACCGCAGATGGCATTGCCACCATGCCATTGTCT-TGCTCAATTCTACGTATCAACGACAC 4847 Query 34625 --GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGT 34682 || ||| |||| |||||||| |||||||| | ||| ||||| | || ||||| | Sbjct 4848 GCGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTGCCCT 4907 Query 34683 TCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTC 34742 | ||||| || || || ||||| ||||||||||| |||||||| ||| | | Sbjct 4908 TTAACATCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTTAAAC 4967 Query 34743 CTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 | || || | || || ||| | || ||||| ||| ||||| |||||||| || Sbjct 4968 CGGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGA 5022 Score = 113 bits (124), Expect = 4e-20 Identities = 277/415 (67%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 || |||||||| ||||| ||| ||||| || | ||| || || | || || || Sbjct 5022 TCTATGTGGTTACTGTAGACATGAGCATCGCCAAGCGTGTGAACGAAGTCTCCCGGTTTA 4963 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 | ||| |||||||| ||||||||||| ||||| || || || ||||| || ||| Sbjct 4962 AGGCCCGTCACATGAGCTATCATGTACGTAAGCAGTGCATACGAGGCGATGTTAAAGGGC 4903 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------A 6721 || || | ||||| ||| | |||||||| |||||||| |||| ||| || Sbjct 4902 ACACCCAGACCCATATCTGCGCTGCGTTGATACAGCTGGCAAGACAACTCACCGCGTGTC 4843 Query 6722 TTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 | | ||||||||||| ||| || ||||| || || | |||||| | || | ||| Sbjct 4842 GTTGATACGTAGAATTGAGCA-AGACAATGGCATGGTGGCAATGCCATCTGCGGTATATC 4784 Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGT-CATCAGGGTTCCGCTTCAAGGTGT 6839 | |||||||| ||| |||| | |||| | | | | | || || | | ||| | Sbjct 4783 CAAAGGGTTCCAAGCGGACATAATAATCCGACGATCCGTTGGATTTGTGCGT-ATGGTTT 4725 Query 6840 CGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGAT 6899 | ||||| | || || ||||| | || ||||| | ||| || | |||| | || Sbjct 4724 CAATCACTTGCTTCAATTGGTCAACACCTTGTCCGGTATAATCATCGTCGCAGGTCTTAT 4665 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954 | | || |||||||| | ||| || || || || ||||| || | ||| |||| Sbjct 4664 ATTTGGCGCCAAAGTGACGCCATTGAAAACCATATACCGGACCAAGATCGGCCTC 4610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448153287328560