Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq6120 113 4e-20
>seq6120
Length=7451
Score = 113 bits (124), Expect = 4e-20
Identities = 277/415 (67%), Gaps = 10/415 (2%)
Strand=Plus/Plus
Query 34391 GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGG 34450
|||| ||| | || ||||| || || || || ||| | |||||||| || | ||| |
Sbjct 4610 GAGGCCGATCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAATATAAG 4669
Query 34451 GGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC 34510
|||| | || ||| | ||||| || | ||||| || || | ||||| || |||
Sbjct 4670 ACCTGCGACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATTGAAACC 4729
Query 34511 TTGAAGCGGAACCCTGATG-ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569
| | || || | | | | | |||| | |||| ||| |||||||| |||| |
Sbjct 4730 AT-ACGCACAAATCCAACGGATCGTCGGATTATTATGTCCGCTTGGAACCCTTTGGATAT 4788
Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAAT---- 34624
|| | |||||| | || || ||||| || ||| ||||||||||| | |
Sbjct 4789 ACCGCAGATGGCATTGCCACCATGCCATTGTCT-TGCTCAATTCTACGTATCAACGACAC 4847
Query 34625 --GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGT 34682
|| ||| |||| |||||||| |||||||| | ||| ||||| | || ||||| |
Sbjct 4848 GCGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTGCCCT 4907
Query 34683 TCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTC 34742
| ||||| || || || ||||| ||||||||||| |||||||| ||| | |
Sbjct 4908 TTAACATCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTTAAAC 4967
Query 34743 CTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797
| || || | || || ||| | || ||||| ||| ||||| |||||||| ||
Sbjct 4968 CGGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGA 5022
Score = 113 bits (124), Expect = 4e-20
Identities = 277/415 (67%), Gaps = 10/415 (2%)
Strand=Plus/Minus
Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607
|| |||||||| ||||| ||| ||||| || | ||| || || | || || ||
Sbjct 5022 TCTATGTGGTTACTGTAGACATGAGCATCGCCAAGCGTGTGAACGAAGTCTCCCGGTTTA 4963
Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667
| ||| |||||||| ||||||||||| ||||| || || || ||||| || |||
Sbjct 4962 AGGCCCGTCACATGAGCTATCATGTACGTAAGCAGTGCATACGAGGCGATGTTAAAGGGC 4903
Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------A 6721
|| || | ||||| ||| | |||||||| |||||||| |||| ||| ||
Sbjct 4902 ACACCCAGACCCATATCTGCGCTGCGTTGATACAGCTGGCAAGACAACTCACCGCGTGTC 4843
Query 6722 TTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
| | ||||||||||| ||| || ||||| || || | |||||| | || | |||
Sbjct 4842 GTTGATACGTAGAATTGAGCA-AGACAATGGCATGGTGGCAATGCCATCTGCGGTATATC 4784
Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGT-CATCAGGGTTCCGCTTCAAGGTGT 6839
| |||||||| ||| |||| | |||| | | | | | || || | | ||| |
Sbjct 4783 CAAAGGGTTCCAAGCGGACATAATAATCCGACGATCCGTTGGATTTGTGCGT-ATGGTTT 4725
Query 6840 CGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGAT 6899
| ||||| | || || ||||| | || ||||| | ||| || | |||| | ||
Sbjct 4724 CAATCACTTGCTTCAATTGGTCAACACCTTGTCCGGTATAATCATCGTCGCAGGTCTTAT 4665
Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954
| | || |||||||| | ||| || || || || ||||| || | ||| ||||
Sbjct 4664 ATTTGGCGCCAAAGTGACGCCATTGAAAACCATATACCGGACCAAGATCGGCCTC 4610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448153287328560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |