Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq17788 145 5e-30
seq489 120 2e-22
>seq17788
Length=7208
Score = 145 bits (160), Expect = 5e-30
Identities = 164/219 (75%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| ||||||||||||||||| || || |||||||| || || || |
Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||||||| | |||| | ||| || ||| ||||||||||| | || ||||||
Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGA 23783
||||| ||| |||| ||||| |||||||| ||||||| ||||| | || | ||
Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCT----GA 2370
Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||| || || || ||||| || || || ||||| |||||
Sbjct 2371 TTATAATATCCAGAAAGAATCGACTTTGCATTTGGTTTT 2409
>seq489
Length=77466
Score = 120 bits (132), Expect = 2e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| ||||| ||||| ||||| || || || || || | || ||||| |
Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || | | |||||||| || | || |||||
Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAAGAGGGCATTCCCCCAGA 4505
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||||||||| | || ||||||||||| ||||||||||| | |||||| | ||| ||
Sbjct 4504 CCAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTA 4445
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819
|||||| ||||| ||||| || | ||||| ||
Sbjct 4444 CAACATTCAAAAGGAGTCGACCCTGCATTTGGT 4412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337929381132284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |