Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq17788 145 5e-30 seq489 120 2e-22 >seq17788 Length=7208 Score = 145 bits (160), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| ||||||||||||||||| || || |||||||| || || || | Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGA 23783 ||||| ||| |||| ||||| |||||||| ||||||| ||||| | || | || Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCT----GA 2370 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || || ||||| || || || ||||| ||||| Sbjct 2371 TTATAATATCCAGAAAGAATCGACTTTGCATTTGGTTTT 2409 >seq489 Length=77466 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| ||||| || || || || || | || ||||| | Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | |||||||| || | || ||||| Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAAGAGGGCATTCCCCCAGA 4505 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||| | || ||||||||||| ||||||||||| | |||||| | ||| || Sbjct 4504 CCAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTA 4445 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| ||||| ||||| || | ||||| || Sbjct 4444 CAACATTCAAAAGGAGTCGACCCTGCATTTGGT 4412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337929381132284