Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq489 120 7e-22 seq9000 100 7e-16 seq6538 93.3 1e-13 seq4101 86.0 1e-11 >seq489 Length=77466 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || ||||| | ||||| |||| | || | |||||||| || ||| Sbjct 4418 TGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCTTCCAGTTGC 4477 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || || |||||||| || ||||| || || ||||| |||||||| Sbjct 4478 TTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTA 4537 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||||||||| || | || || || || || || ||||| || || Sbjct 4538 GCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTG 4597 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 | |||||| | ||| | |||||||| Sbjct 4598 AGAGTTTTGACGAATATCTGCATTTT 4623 >seq9000 Length=5484 Score = 100 bits (110), Expect = 7e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || | ||| |||||| || || ||||| ||| ||||||||||||| ||||||||| Sbjct 1764 ATGTCAAAGGTGGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATCATCCACCGCT 1705 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | |||||| || |||||||||||| |||||||| |||| | | |||| || Sbjct 1704 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGGT 1645 Query 7844 AATATTTACGCGTTAGCTTAATTAATATAAAA 7875 | || |||||||||||| ||| | |||| Sbjct 1644 CAACTTCACGCGTTAGCTTCGTTACTGAAAAA 1613 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 845 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 903 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 |||||| |||| || ||||||||| | || | ||||| || |||| Sbjct 904 CAGTGGGGAATTTTGGACAATGGGGGCAACCCTGATCCAGCAATG 948 >seq6538 Length=3451 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7758 TCAAATTAAACCACATACTCCACCGCTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTA 7817 || ||||||||||||| ||||||||||| | | | |||||| || |||||||||| | Sbjct 2166 TCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCA 2107 Query 7818 ACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851 |||||||||||||| | | ||||||| ||| ||| Sbjct 2106 ACCTTGCGGTCGTACTCCCCAGGTGGGATACTTA 2073 >seq4101 Length=142893 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| ||||| ||||| || || | | || ||||||||||| Sbjct 72277 GAAAATTTGTCCATCAGTAATGGAGATTACATTGGTTGGCACGAATGCTGAAACATCACC 72336 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 ||||| || |||| || || |||||||| ||||| ||| Sbjct 72337 AGCTTGAGTCTCGATAATCGGCAAGGCTGTAAGTGAACCA 72376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192233666074262