Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq489 120 7e-22
seq9000 100 7e-16
seq6538 93.3 1e-13
seq4101 86.0 1e-11
>seq489
Length=77466
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || || || || ||||| | ||||| |||| | || | |||||||| || |||
Sbjct 4418 TGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCTTCCAGTTGC 4477
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || ||||| || || |||||||| || ||||| || || ||||| ||||||||
Sbjct 4478 TTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTA 4537
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| ||||||||||| || | || || || || || || ||||| || ||
Sbjct 4538 GCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTG 4597
Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716
| |||||| | ||| | ||||||||
Sbjct 4598 AGAGTTTTGACGAATATCTGCATTTT 4623
>seq9000
Length=5484
Score = 100 bits (110), Expect = 7e-16
Identities = 114/152 (75%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || | ||| |||||| || || ||||| ||| ||||||||||||| |||||||||
Sbjct 1764 ATGTCAAAGGTGGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATCATCCACCGCT 1705
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843
| | | |||||| || |||||||||||| |||||||| |||| | | |||| ||
Sbjct 1704 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGGT 1645
Query 7844 AATATTTACGCGTTAGCTTAATTAATATAAAA 7875
| || |||||||||||| ||| | ||||
Sbjct 1644 CAACTTCACGCGTTAGCTTCGTTACTGAAAAA 1613
Score = 89.7 bits (98), Expect = 1e-12
Identities = 85/105 (81%), Gaps = 3/105 (3%)
Strand=Plus/Plus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825
|||||| ||||||||||||| ||||||||| | |||||||| | || ||| | |||||
Sbjct 845 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 903
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870
|||||| |||| || ||||||||| | || | ||||| || ||||
Sbjct 904 CAGTGGGGAATTTTGGACAATGGGGGCAACCCTGATCCAGCAATG 948
>seq6538
Length=3451
Score = 93.3 bits (102), Expect = 1e-13
Identities = 77/94 (82%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 7758 TCAAATTAAACCACATACTCCACCGCTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTA 7817
|| ||||||||||||| ||||||||||| | | | |||||| || |||||||||| |
Sbjct 2166 TCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCA 2107
Query 7818 ACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851
|||||||||||||| | | ||||||| ||| |||
Sbjct 2106 ACCTTGCGGTCGTACTCCCCAGGTGGGATACTTA 2073
>seq4101
Length=142893
Score = 86.0 bits (94), Expect = 1e-11
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| ||||||||||| ||||| ||||| || || | | || |||||||||||
Sbjct 72277 GAAAATTTGTCCATCAGTAATGGAGATTACATTGGTTGGCACGAATGCTGAAACATCACC 72336
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569
||||| || |||| || || |||||||| ||||| |||
Sbjct 72337 AGCTTGAGTCTCGATAATCGGCAAGGCTGTAAGTGAACCA 72376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192233666074262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |