Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 113 4e-20
>seq4404
Length=3800
Score = 113 bits (124), Expect = 4e-20
Identities = 185/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877
||||| ||||| |||| | |||||||||||| || || | |||||| || ||||| ||
Sbjct 2399 ATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGG 2340
Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937
|| || || ||||| | || || || ||||||||||| | | || | || || ||
Sbjct 2339 AAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAA 2280
Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997
||||| || || || || || || ||||| || ||||| || || ||||| || |
Sbjct 2279 TTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGA 2220
Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057
| |||| | |||| || ||| | | ||| || || | | ||| ||||| |||
Sbjct 2219 CGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCA 2160
Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTT 5084
|| ||||| || || || || || |||
Sbjct 2159 ACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426948249519509
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |