Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq12641 223 2e-53 >seq12641 Length=70532 Score = 223 bits (246), Expect = 2e-53 Identities = 577/875 (66%), Gaps = 6/875 (1%) Strand=Plus/Plus Query 78284 AACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACCCTT 78343 || || ||| |||| ||||| || || | || || || || ||||| |||| || || Sbjct 61663 AATTTTTGGCTGCCGGAGAAAGTGCCACTTTCAAATGATATTCCATCTTGGGCAACGCTA 61722 Query 78344 ACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGACACC 78403 ||| || ||||| | || || || || |||||||| || || | || || || || || Sbjct 61723 ACGGCGCAAGAGCAAGAGCTGACCATTCGTGTGTTTACAGGTTTGACGCTACTTGATACG 61782 Query 78404 ATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGAGGAG 78463 | ||| || || || | | | || | || || || || ||||| ||| Sbjct 61783 GTACAGAATGTGGTAGGTGCTTTGTGTTTGATTCCAGATGCTGTGACGCCACACGAAGAG 61842 Query 78464 GCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTCGATC 78523 |||| ||||| ||| | || ||||| |||||||||| || ||||| || || Sbjct 61843 TCGGTTTATACCAATATCTCTTTTATGGAAGCGGTACACGCGAAAAGTTACAGTTCAATT 61902 Query 78524 TTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGAGAAC 78583 || || || ||||| ||| | | || || || || || ||| || ||| Sbjct 61903 TTTTCTACTCTATGTCAGATGAAGGATGTGGATGAAGCATTTCGCTGGAGCATAGAAAAC 61962 Query 78584 GAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGACCCCTTG 78643 || | |||||| |||||| |||| || ||| | || || || || ||||| || Sbjct 61963 GAATTCCTGCAAAACAAGGCAAAGATTGTATTGGGGCATTATCGTGGGGATGACCCTTTA 62022 Query 78644 AAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTACCTG 78703 | ||| ||||| ||||| || | ||| || | ||||| || ||||| || || Sbjct 62023 ATGCGTAAGGTTGCCAGCGTTTTCTTAGAGTCATTTTTATTCTATTCTGGCTTTTATTTG 62082 Query 78704 CCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTTGATT 78763 || ||||||||| || || || || |||| || || |||||| | ||| | |||||| Sbjct 62083 CCAATGTACTGGAGTAGTCGAGCAAAATTGACTAATACGGCGGACTTAATCAGATTGATT 62142 Query 78764 ATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGGCCTCGAG 78823 || || || ||||| || || || || ||||| || || || | |||| || | | | Sbjct 62143 ATTCGTGATGAAGCGGTGCACGGTTATTACATTGGTTATAAATTTCAGCAAGCCTACAAT 62202 Query 78824 AC--CCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTCGG 78881 | ||| | | | | || | ||| | || | ||| | | || |||| | Sbjct 62203 AAAGCCACGCCTAGTCAC--CAAGAAGAGGTGAAAAACTACGCTTATGAATTGCTTCATG 62260 Query 78882 AGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCGGACTCACCG 78941 | | || || ||||| | ||||| ||| | | || |||| || || |||| Sbjct 62261 ATTTGTATGATAACGAAGTCAAGTACACGGAGGATTTATACGACGCTGTTGGCTGGACCG 62320 Query 78942 AGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCTACG 79001 | ||||| ||||||||| ||| |||||||| ||||||||| | ||||| | || | | Sbjct 62321 AAGATGTAAAGAAGTTCTTGCACTACAACGCCAACAAGGCTTTAATGAATTTGGGTTTTG 62380 Query 79002 AAGCACTGTTCCCCAAGGAAGAGACC-ATGGCAGACCCGGCCATCATGTCCGCGCTCTCA 79060 ||||||| || || | || ||| | | ||||| ||| | | || || || Sbjct 62381 AAGCACTCTTTCCTAGCTCTACTACGGATGTGA-ATCCGGCAATCTTAGCGGCCCTATCG 62439 Query 79061 CCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATCGGC 79120 ||| ||| || || || || || |||||||| || || |||||| || ||||| || Sbjct 62440 CCAAGCGCGGATGAAAATCATGATTTCTTCTCGGGTTCTGGCTCGTCATATGTCATTGGT 62499 Query 79121 AAAGCTGAAGCCACGGCAGATGAGGACTGGGACTT 79155 ||||||||||| || |||||||||||||||||||| Sbjct 62500 AAAGCTGAAGCTACAGCAGATGAGGACTGGGACTT 62534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299250562846514