Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1169 778 0.0 seq4404 205 1e-47 >seq1169 Length=8375 Score = 778 bits (862), Expect = 0.0 Identities = 1290/1847 (70%), Gaps = 18/1847 (1%) Strand=Plus/Plus Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861 ||| || ||||| |||| ||| ||||| |||||||| ||||| ||||| || || Sbjct 851 TGCCGGCTTTGTGCGTAAATAATACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAA 910 Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 || || |||| ||| |||| | || ||||| | ||| ||||| | ||||| || Sbjct 911 GTGTATTGAAGTCAATTTACCATAATTTGGTTCGGCGACATGTATATTGAATGACTGGCT 970 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 ||| || ||||||||||||||||| || ||||||||||| | | ||| || ||| || Sbjct 971 TTGGTCAATGAAAGCTCCTCTATCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTC 1030 Query 76982 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA-GGTTT--GTATTTTGAATGGA 77038 ||| | |||||| | | | | ||| ||| | |||| |||| ||| |||||| || Sbjct 1031 CCAGACAGTTTTATATAAGTCTCTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGA 1090 Query 77039 ACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA 77098 ||||| | ||| | || |||| || |||||||||| |||||| | | || ||||| Sbjct 1091 ACCACGACTTGACACTATATTATTTTTCATATCATCATCCCACAAATCCAATTCAGTTAA 1150 Query 77099 AACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTA 77158 | | | | | || | | ||||| | |||||| |||||||| || || || | ||||| Sbjct 1151 ATCACGTAATAAATAATGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTA 1210 Query 77159 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGC 77218 ||||| || || ||||| | |||||||| ||||||| |||||||| |||||||| Sbjct 1211 TATATTTGAAGTGTAGGGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGC 1270 Query 77219 AGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 || ||||| ||||| || | | |||||| | |||| || || ||| || Sbjct 1271 TGTAGGCATTGGTGCTACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTT 1330 Query 77279 TAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || | || ||||||||| | || | ||| |||| | || |||||||| || Sbjct 1331 TAATTGTTGCCAATCCCACAAATTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGAT 1390 Query 77339 TCCGTTACTAGCATATG--ATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGT 77396 ||| || || ||| | ||| | ||| || ||||| || || | ||||||| ||| Sbjct 1391 TCCTTTGCT--TATAGGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGT 1448 Query 77397 TCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 77456 |||||||| ||||| || | | |||||| || ||||| ||||| | | ||| | | Sbjct 1449 TCACAACTTGCTTCTAAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGA 1508 Query 77457 TGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGA 77516 ||||| || ||| | |||||| | | | ||| | ||||| || || |||||| Sbjct 1509 AAGGCTTCTTCGCTTTCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGA 1568 Query 77517 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAA 77576 || ||||| |||||||| | ||||||| || || || ||| ||| | | ||||||| Sbjct 1569 ACGCCAATGCCAATAGGACGATGTCTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAA 1628 Query 77577 TAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGT 77636 ||||| ||||| || |||||||| ||||||| |||| ||| || ||||||| Sbjct 1629 TAATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAAC 1688 Query 77637 TTAAGAAAATCAAATCTTCCATC---TATAACAAACATGTTCAAAGCTATAGATGCTAGA 77693 || |||||| || || || |||||||| || || || || ||||| | | Sbjct 1689 TTTTCGAAATCATATTTTTTTTCCGAGGACACAAACATATTTAAGGCAATCGATGCCAAA 1748 Query 77694 TTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTA 77753 || || || || | |||| | | ||||| || || || || |||| |||||| Sbjct 1749 TTGCATACCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTG 1808 Query 77754 CATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGA 77813 ||||| || ||||| | ||||||||||||||| ||| |||| ||||| || ||| | | Sbjct 1809 CATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAAC 1868 Query 77814 ATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGC 77872 ||| | ||||| || ||||| | || | ||| || ||||| ||| | || | | || Sbjct 1869 ATATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATTGT-GC 1927 Query 77873 TTTTA-TCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATT 77931 ||| | | | | ||| || | ||| |||||||| ||||| | |||||| | Sbjct 1928 TTTAATTTTTCTACTTG-CGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAACT 1986 Query 77932 CATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCAC 77991 | || ||||||||||||| | |||||||||| || || ||||| | |||||| || | Sbjct 1987 CGTCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTCTC 2046 Query 77992 CATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 |||||||| |||||||||||||| || || || ||||| ||||| ||||| ||| | Sbjct 2047 GATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCAC 2106 Query 78052 GGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAG 78111 | | ||| |||||||| ||||| ||||| ||||| ||||| | ||||| | ||| || | Sbjct 2107 GAGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTG 2166 Query 78112 AATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTA 78171 |||||| || |||| ||| || || | ||||||| | ||| |||||| ||||||| Sbjct 2167 CATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTA 2226 Query 78172 TATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCAT 78231 ||||| ||| |||||| ||||||| | |||||| | || || || ||||| |||| Sbjct 2227 CATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCAT 2286 Query 78232 TTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTC 78291 | ||||| ||||| || | || | || ||||| | || ||| |||||||| | Sbjct 2287 TAGTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCCAC 2346 Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351 | || || ||||| | || || ||| | | | | || || |||||| | Sbjct 2347 CGGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAAT 2406 Query 78352 CATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTA 78410 | | | || |||||| ||||||||| ||| | ||| || || ||| | ||| | Sbjct 2407 CCGCTACCATTGTTAA-AAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCA 2465 Query 78411 AATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATA 78470 || || || || ||||||||||| || | ||| ||||||||||| || ||||| || Sbjct 2466 AACAAAGTAGGTGATGCATGCGTGAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATT 2525 Query 78471 GCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 |||| || || ||| || | || || || | ||| |||||||| ||||| || ||||| Sbjct 2526 GCTGCATCAATATCCTCACCG-TGTATACCAATCGCAACACGCATTAACATGTGTTGAGG 2584 Query 78530 TCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 78589 ||| ||| | |||| |||||||| || || || ||| ||||||||||||||| || Sbjct 2585 TCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACGATCGTTCCAAAGTTTTAAATCC 2644 Query 78590 AAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 ||||||||| || ||| || | ||||||||||| | ||||||| Sbjct 2645 AAAATAGTTATAACCAAAATCACGGTCGTAAATAATTGCGGAATTTA 2691 Score = 105 bits (116), Expect = 9e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 78752 tttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATC 78811 ||| |||||||| ||||||||||| ||||| || |||||||| |||| ||| || ||||| Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674 Query 78812 AGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGT 78871 | || | |||||| || | ||||| ||||| || |||||| | |||||||| || Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTCCTGTGT 6734 Query 78872 TGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 || || ||| ||| || || | || ||||| Sbjct 6735 AGTAACGCCACAATAAAGACCGTTTATTACTTT 6767 >seq4404 Length=3800 Score = 205 bits (226), Expect = 1e-47 Identities = 412/604 (68%), Gaps = 14/604 (2%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---AGACATAACTCCCATTT 47850 ||||||||||| |||| |||| |||| || ||| | |||||| || ||||| Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 ||||||||| || || |||||||||||| || || ||||| |||| || || || Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970 |||| || |||||||| || || || ||||| | || | ||| | | Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 | | ||| || || || || |||||| ||||| || ||||||||| || || || | Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT-- 48088 |||| || | || || || | || || || || || |||| || ||| || || Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788 Query 48089 CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTA-AACATGCAA 48147 | || ||| | | | |||| | | || |||||| | ||||| | |||| |||| Sbjct 2787 CAATAATACGCTCT--TTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 | ||||| || | ||||||||| | ||||||||| || || ||||| | ||| |||| Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267 | || |||||||| || |||||||| || | ||| ||| ||| |||||||||||| | Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCG----TAACTGGCTTCGTTGTGTATCCAC 48323 | || || ||||| || ||| |||||| ||| || ||| |||| || ||||| Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATG-AAATCCAA 2552 Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 | |||||||||||||| || ||| ||||| || || || ||||| || ||| Sbjct 2551 GAGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGA 2492 Query 48384 AAGT 48387 ||| Sbjct 2491 TAGT 2488 Score = 120 bits (132), Expect = 4e-22 Identities = 185/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 || || || ||||||| ||||||||||||||||| | |||||| || || || || || Sbjct 2396 TAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAG 2337 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 || || || || | || || || | || || || | || || || ||||||| Sbjct 2336 CCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTT 2277 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 ||||| || || ||||| ||||||||| || || || || || || |||| Sbjct 2276 TCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGC 2217 Query 48591 TCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 48650 ||||| ||| || ||| ||| || | | || || || | ||||||||| ||| || Sbjct 2216 TCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACT 2157 Query 48651 GTCCAAAATGATGCCTCTGCTTTT 48674 ||||| |||||||||||||| ||| Sbjct 2156 GTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694499708930720