Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1169 776 0.0 seq4404 187 4e-42 >seq1169 Length=8375 Score = 776 bits (860), Expect = 0.0 Identities = 1290/1849 (70%), Gaps = 22/1849 (1%) Strand=Plus/Plus Query 75397 TGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 75456 ||| || ||||| |||| ||| ||||| |||||||| ||||| ||||| || || Sbjct 851 TGCCGGCTTTGTGCGTAAATAATACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAA 910 Query 75457 ATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACT 75516 || || || | ||| |||| | || ||||| | ||| ||||| | ||||| || Sbjct 911 GTGTATTGAAGTCAATTTACCATAATTTGGTTCGGCGACATGTATATTGAATGACTGGCT 970 Query 75517 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 75576 ||| || ||||||||||||||||| || ||||||||||| | | ||| || ||| || Sbjct 971 TTGGTCAATGAAAGCTCCTCTATCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTC 1030 Query 75577 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG---TATTTTGAATGGA 75633 ||| | |||||| | | | | ||| ||| | |||| || ||| |||||| || Sbjct 1031 CCAGACAGTTTTATATAAGTCTCTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGA 1090 Query 75634 TCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | | || | || |||| || || ||||||| |||||| | || ||||| Sbjct 1091 ACCACGACTTGACACTATATTATTTTTCATATCATCATCCCACAAATCCAATTCAGTTAA 1150 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | | | | | || | | ||||||| |||||| |||||||| || || |||| ||||| Sbjct 1151 ATCACGTAATAAATAATGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTA 1210 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||||| || || ||||| | |||||||| ||||||| |||||||| || ||||| Sbjct 1211 TATATTTGAAGTGTAGGGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGC 1270 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 || ||||| ||||| || | | |||||| | |||| || || ||| || Sbjct 1271 TGTAGGCATTGGTGCTACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTT 1330 Query 75874 TAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 || | || ||||||||| | || | |||| |||| | || |||||||| || Sbjct 1331 TAATTGTTGCCAATCCCACAAATTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGAT 1390 Query 75934 TCCGTTGCTAGCATATGA--TCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGT 75991 ||| ||||| ||| | ||| | ||| || || || | || | ||||||||| ||| Sbjct 1391 TCCTTTGCTT--ATAGGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGT 1448 Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT 76051 || ||||| || ||||| | || |||||| || ||||| ||||| | | ||| | | Sbjct 1449 TCACAACTTGCTTCTAAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGA 1508 Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 ||||| || ||| | |||||| | | | ||| | ||||| || | |||||| Sbjct 1509 AAGGCTTCTTCGCTTTCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGA 1568 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAA 76171 || ||||| |||||||| | ||||||| || || || ||| ||| | | ||| ||| Sbjct 1569 ACGCCAATGCCAATAGGACGATGTCTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAA 1628 Query 76172 TAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGT 76231 ||||| || || || |||||||| ||||||| |||| ||| || ||||||| Sbjct 1629 TAATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAAC 1688 Query 76232 TTGAGAAAATCAAATTTTCCATCTAT---CACAAACATATTAAGAGCTATAGATGCTAGA 76288 || |||||| ||||| || |||||||||||| | || || ||||| | | Sbjct 1689 TTTTCGAAATCATATTTTTTTTCCGAGGACACAAACATATTTAAGGCAATCGATGCCAAA 1748 Query 76289 TTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTA 76348 || || || || | |||| | | ||||| || || || ||||||| |||||| Sbjct 1749 TTGCATACCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTG 1808 Query 76349 CACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGA 76408 || || || || |||| ||||||||||||||| ||| | |||||||| || ||| | | Sbjct 1809 CATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAAC 1868 Query 76409 ACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC-GACTCTAGC 76467 | | | ||||| |||||||| | || | ||| || ||||| ||| | || | | || Sbjct 1869 ATATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATTGT-GC 1927 Query 76468 TTTTATTATAG-ATTTGTATCGCTTCTCTCTT--TCATATTGTGTATATAACCGTTCAAA 76524 ||| ||| | | ||| ||| | |||| ||||||| | ||||||| |||||| Sbjct 1928 TTTAATTTTTCTACTTG---CGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAA 1984 Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584 || || ||||||||||||| | ||||| |||| || |||||||| | ||||||||| Sbjct 1985 CTCGTCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTC 2044 Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 | |||||||| || ||||||||||| || || || ||||| ||||| ||||| ||| Sbjct 2045 TCGATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATC 2104 Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704 || | ||| ||||||| ||||| ||||| ||||| ||||| | |||||| | ||| || Sbjct 2105 ACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTC 2164 Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 | |||||| || |||| ||| || || | | || || | ||| |||||| ||||| Sbjct 2165 TGCATGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATC 2224 Query 76765 TATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACC 76824 || ||||| || |||||| ||||||| | |||||| | || || || |||||||| Sbjct 2225 TACATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACC 2284 Query 76825 ATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCC 76884 ||| ||||| ||||| || | || |||||||| | || | || |||||||| Sbjct 2285 ATTAGTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCC 2344 Query 76885 TCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACT 76944 || || ||| || || | ||||| ||| | | | | | ||||| |||||| Sbjct 2345 ACCGGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGA 2404 Query 76945 ATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCAT 77003 ||| | | || |||||| ||||||||| ||| | ||| || || ||| | ||| Sbjct 2405 ATCCGCTACCATTGTTAA-AAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAG 2463 Query 77004 TAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAA 77063 |||||| ||||| |||||||| ||||| | ||| ||||||||||| || ||||| | Sbjct 2464 CAAACAAAGTAGGTGATGCATGCGTGAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTA 2523 Query 77064 TAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 | |||| || |||||| || | || || || | || |||||||| ||||| || ||| Sbjct 2524 TTGCTGCATCAATATCCTCACCG-TGTATACCAATCGCAACACGCATTAACATGTGTTGA 2582 Query 77123 GGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 77182 |||| || | |||| |||||||| || || || ||| ||||||||||||||| Sbjct 2583 GGTCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACGATCGTTCCAAAGTTTTAAAT 2642 Query 77183 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 ||||||||||| || ||| || | ||||||||||| | ||||||| Sbjct 2643 CCAAAATAGTTATAACCAAAATCACGGTCGTAAATAATTGCGGAATTTA 2691 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 77347 tttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTC 77406 ||| |||||||| ||||||||||| ||||| || ||||| || |||| ||| || || || Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674 Query 77407 AGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGT 77466 | || | |||||| | | ||||| ||||| || |||||| | ||||| || || Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTCCTGTGT 6734 Query 77467 AGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499 |||||| || ||| || || | || ||||| Sbjct 6735 AGTAACGCCACAATAAAGACCGTTTATTACTTT 6767 >seq4404 Length=3800 Score = 187 bits (206), Expect = 4e-42 Identities = 409/604 (68%), Gaps = 14/604 (2%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 46339 |||||||||| |||| |||| |||| || ||| | ||||| || ||||| Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 ||| ||||| ||||| |||||||||||| || || ||||| |||| || || || Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 |||| || || ||||| | || || ||||| | || | ||| | | Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 | | ||| || || || || ||||| ||||| || ||||||||| || || || | Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT-- 46577 | ||||| | || || || | || || || || || |||| || ||||| || || Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTA-AACATGCAA 46636 | || ||| | | | |||| | |||| |||||| | ||||| | |||| |||| Sbjct 2787 CAATAATACGCTCT--TTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 | ||||| || | |||||||| | ||||||||| || || ||||| | ||||||| Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 | || ||||| || || |||||||| || | ||| ||| ||| |||||||||||| | Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATG-AATCCAC 46812 | || || || || || | || |||||| ||| || | || | ||| ||| |||||| Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGC-TGATTTCGATGAAATCCAA 2552 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | |||||||||||||| || ||| ||||| || || || ||||| || ||| Sbjct 2551 GAGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGA 2492 Query 46873 AAGT 46876 ||| Sbjct 2491 TAGT 2488 Score = 120 bits (132), Expect = 4e-22 Identities = 191/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||| | | ||| || || ||||||| ||||||||||| || || | ||||| || || Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || || || | ||| ||||| | || || ||| | || || || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 |||||| |||||||| || ||||| ||||||||| || ||||| || || || Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 |||| || | ||| || ||| ||| || | | || || || | |||||| Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 ||| ||| ||||||||||||| |||||||| ||| Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712760862855360