Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_031098.1
Length=40749
Score E
Sequences producing significant alignments: (Bits) Value
seq10695 583 2e-162
>seq10695
Length=46784
Score = 583 bits (646), Expect = 2e-162
Identities = 864/1214 (71%), Gaps = 24/1214 (2%)
Strand=Plus/Plus
Query 477 AAAAGATGCCGAACATCAATCCAACACTGAATGTGCCTCAGGCTAACTTCCTACAATTAC 536
|||||||||| | |||||||| | ||||| | |||||| |||| || |||| | |
Sbjct 41631 AAAAGATGCCTGAAATCAATCCGTCTTTGAATATTCCTCAGTCTAAATTTCTACTGATGC 41690
Query 537 CAAATAAATTTAGAGCGTTCGTTGCTGGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTT 596
| || || ||| | || || || || || |||||| |||||||||||||| || ||||
Sbjct 41691 CTAACAAGTTTCGGGCATTTGTGGCGGGATTTGGTAGTGGTAAAACATGGGTCGGATGTT 41750
Query 597 CAAGTCTTTGTGATAAGTCT---TGGTCTTTCCCTAAAGTTCCGTTGGGTTACTTTGCTC 653
|| || ||||| | ||||| ||| ||| ||||||| ||| | || ||||| || |
Sbjct 41751 CA--TCATTGTG-TCAGTCTGCATGGGCTTATCCTAAAGCACCGCTTGGATACTTCGCAC 41807
Query 654 CAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATT 713
| || ||||||||||| || ||||| || || || |||||||| ||||| || ||||| |
Sbjct 41808 CGACCTATCCGCAGATTCGGGATATTTTCTTTCCAACGATTGAGGAAGTGGCATTCGACT 41867
Query 714 GGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCC 773
|||| || || | | || | ||||| ||||| ||||| ||| |||| || || | |
Sbjct 41868 GGGGCTTAAATGTAGACATTAAAGAATCCAACAAGGAAGTCGATGTTTATTACGGTAGTC 41927
Query 774 AATATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTA 833
| || || | || || |||||||| || |||||||| || | || ||||| || ||||
Sbjct 41928 AGTACCGGACAACCATCATTTGCCGCTCGATGGAAAAACCGCAGACCATTGTCGGGTTTA 41987
Query 834 AGATTGGTCATGCGC--TGATTGATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACA 891
|| | | | |||| | | ||||| ||||| ||||||| |||| || || ||
Sbjct 41988 AGGTA--TTAAGCGCATTAGTCGATGAACTTGACGTGATGAACAAGGATAAAGCACAGGT 42045
Query 892 AGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTGTTGAACGGTAT 951
| | |||||||| ||||||||||||||||| || | | | ||| || ||| | ||
Sbjct 42046 ATCATGGCGTAAAATCATTGCTCGTATGCGTTACACCTACCCCGGTGCTTTAAACCGGAT 42105
Query 952 TGATGTTGCAACAACGCCAGAGGGCTTTAAGTTCACTCATGAGCAATTTGTCAAAGAAGC 1011
||| ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 42106 TGACGTTGCAACAACACCAGAGGGCTTCAAGTTCACTTATGAGCAGTTTGTCAAAGAAGC 42165
Query 1012 AAACCAAAGCGAGGCTAAGCGCGCTCTATATGGAATGATTCAAGCTTCCACCTATGATAA 1071
|| ||| | || |||||| |||| || ||| | |||||||| || ||||| ||
Sbjct 42166 CAATTCAAGTCCGCAGAAACGCGCTTTATACGGCATGGTGCAAGCTTCGACTTATGACAA 42225
Query 1072 TGAAGCCAATCTTCCTGATGACTACATTGCATCATTGTTTGAGTCTTACCCACCTCAATT 1131
||| || | || || || || | ||| | || || |||||||| |||||
Sbjct 42226 TGAGAAGAACTTGCCGCCGGATTATATCGAATCGCTTCGGGAATCCTACCCACCGCAATT 42285
Query 1132 GATTTCAGCCTACTTAAAAGGGCAATTCGTAAATTTAACGAGTGGGGCTGTATATCCAGA 1191
|||| |||||| | ||| || || || || || || ||||| || || ||||| ||
Sbjct 42286 GATTGAAGCCTATCTGCGAGGTCAGTTTGTCAACTTGACCAGTGGCGCGGTTTATCCTGA 42345
Query 1192 CTTCGACCGGACCTTAAACCATACAGATGAGGAAATAAGACCTAATGAGGCTTTACTCAT 1251
|| || |||| | || ||||| |||| ||||| | || ||| ||| || ||
Sbjct 42346 TTTTGATCGGAAGCTGAATCATACCGATGCTGAAATCCAATCTGGTGAACATTTGCTGAT 42405
Query 1252 TGGTATGGACTTCAACGTCTTGAAGATGGCAGCTGTTGTTTATGTGATTCGAGATGGCAA 1311
||| ||||| || ||||| |||| ||||| || | |||||||||||||| | ||
Sbjct 42406 TGGCATGGATTTTAACGTGCTGAAAATGGCCGCAGCGGTTTATGTGATTCGCCAGGGTGT 42465
Query 1312 GCCAAGAGCT-TTAGATGAGTTGGTCGGTGTGCGTGATACGCCAACAATGGCCGATCTAT 1370
||||| ||| | |||||| | || || | | |||||||| |||||||| | ||
Sbjct 42466 GCCAA-TGCTACTTGATGAGATCGTGGGCGCAAGGGATACGCCGACAATGGC---GCAAT 42521
Query 1371 TAATTGAAAAG---TTCCCAAACCATGAGATGACAGTTATCCCTGATGCGGCAGGCCAAG 1427
| || || || | ||| |||| | || || | | || ||||| ||||||||||
Sbjct 42522 TGATCAAAGAGCGCTACCCGTTCCATCAAATAACCATCTTTCCAGATGCAGCAGGCCAAG 42581
Query 1428 CTACTTCATCAAAAAAGAGTAGCGAATCTGATCATGCAATCTTGAGACAGAAGGGCTTAA 1487
| |||||||||||||| ||||| ||||| || ||||| ||| ||||| | ||||| |
Sbjct 42582 CGACTTCATCAAAAAACAGTAGTGAATCAGACCATGCCATCCTGAGAGCGTCAGGCTTTA 42641
Query 1488 GGGTCGAAGTCAATTCAACAAACCCGAACATTAAAGACCGAATTAATGCAGTAAATGCTT 1547
| ||||| || |||||||| || ||||||||| | ||||| || ||||||
Sbjct 42642 AACTTGAAGTAAACGGCACAAACCCAGCAATCAAAGACCGATTGAATGCGGTGAATGCTG 42701
Query 1548 TGATCTTAAATGGCAATGGTGAGCGAACACTCTTA---GTCAATACAAATAAATGCCCAA 1604
|| | || || ||||| || | ||| || ||||| ||||||||||| |
Sbjct 42702 CTATTTGCAACTCGAAAGGTGAACG---CTTGTTAAGGGTGAATACCAATAAATGCCCTA 42758
Query 1605 GACTCACAGAGACCTTTGAGCAGCAAGTTTATGACGATTTTGGAATGCCAGATAAGAAAT 1664
|| ||||| | ||||||||||||| ||||||||||| || ||||||||||| || |
Sbjct 42759 GAGCGACAGAAGCACTTGAGCAGCAAGTCTATGACGATTTCGGGATGCCAGATAAAAAGT 42818
Query 1665 CAGGCTTGGACCAT 1678
| || |||| |||
Sbjct 42819 CTGGACTGGATCAT 42832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130245074918486
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |