Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq10695 583 2e-162 >seq10695 Length=46784 Score = 583 bits (646), Expect = 2e-162 Identities = 864/1214 (71%), Gaps = 24/1214 (2%) Strand=Plus/Plus Query 477 AAAAGATGCCGAACATCAATCCAACACTGAATGTGCCTCAGGCTAACTTCCTACAATTAC 536 |||||||||| | |||||||| | ||||| | |||||| |||| || |||| | | Sbjct 41631 AAAAGATGCCTGAAATCAATCCGTCTTTGAATATTCCTCAGTCTAAATTTCTACTGATGC 41690 Query 537 CAAATAAATTTAGAGCGTTCGTTGCTGGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTT 596 | || || ||| | || || || || || |||||| |||||||||||||| || |||| Sbjct 41691 CTAACAAGTTTCGGGCATTTGTGGCGGGATTTGGTAGTGGTAAAACATGGGTCGGATGTT 41750 Query 597 CAAGTCTTTGTGATAAGTCT---TGGTCTTTCCCTAAAGTTCCGTTGGGTTACTTTGCTC 653 || || ||||| | ||||| ||| ||| ||||||| ||| | || ||||| || | Sbjct 41751 CA--TCATTGTG-TCAGTCTGCATGGGCTTATCCTAAAGCACCGCTTGGATACTTCGCAC 41807 Query 654 CAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATT 713 | || ||||||||||| || ||||| || || || |||||||| ||||| || ||||| | Sbjct 41808 CGACCTATCCGCAGATTCGGGATATTTTCTTTCCAACGATTGAGGAAGTGGCATTCGACT 41867 Query 714 GGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCC 773 |||| || || | | || | ||||| ||||| ||||| ||| |||| || || | | Sbjct 41868 GGGGCTTAAATGTAGACATTAAAGAATCCAACAAGGAAGTCGATGTTTATTACGGTAGTC 41927 Query 774 AATATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTA 833 | || || | || || |||||||| || |||||||| || | || ||||| || |||| Sbjct 41928 AGTACCGGACAACCATCATTTGCCGCTCGATGGAAAAACCGCAGACCATTGTCGGGTTTA 41987 Query 834 AGATTGGTCATGCGC--TGATTGATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACA 891 || | | | |||| | | ||||| ||||| ||||||| |||| || || || Sbjct 41988 AGGTA--TTAAGCGCATTAGTCGATGAACTTGACGTGATGAACAAGGATAAAGCACAGGT 42045 Query 892 AGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTGTTGAACGGTAT 951 | | |||||||| ||||||||||||||||| || | | | ||| || ||| | || Sbjct 42046 ATCATGGCGTAAAATCATTGCTCGTATGCGTTACACCTACCCCGGTGCTTTAAACCGGAT 42105 Query 952 TGATGTTGCAACAACGCCAGAGGGCTTTAAGTTCACTCATGAGCAATTTGTCAAAGAAGC 1011 ||| ||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||| Sbjct 42106 TGACGTTGCAACAACACCAGAGGGCTTCAAGTTCACTTATGAGCAGTTTGTCAAAGAAGC 42165 Query 1012 AAACCAAAGCGAGGCTAAGCGCGCTCTATATGGAATGATTCAAGCTTCCACCTATGATAA 1071 || ||| | || |||||| |||| || ||| | |||||||| || ||||| || Sbjct 42166 CAATTCAAGTCCGCAGAAACGCGCTTTATACGGCATGGTGCAAGCTTCGACTTATGACAA 42225 Query 1072 TGAAGCCAATCTTCCTGATGACTACATTGCATCATTGTTTGAGTCTTACCCACCTCAATT 1131 ||| || | || || || || | ||| | || || |||||||| ||||| Sbjct 42226 TGAGAAGAACTTGCCGCCGGATTATATCGAATCGCTTCGGGAATCCTACCCACCGCAATT 42285 Query 1132 GATTTCAGCCTACTTAAAAGGGCAATTCGTAAATTTAACGAGTGGGGCTGTATATCCAGA 1191 |||| |||||| | ||| || || || || || || ||||| || || ||||| || Sbjct 42286 GATTGAAGCCTATCTGCGAGGTCAGTTTGTCAACTTGACCAGTGGCGCGGTTTATCCTGA 42345 Query 1192 CTTCGACCGGACCTTAAACCATACAGATGAGGAAATAAGACCTAATGAGGCTTTACTCAT 1251 || || |||| | || ||||| |||| ||||| | || ||| ||| || || Sbjct 42346 TTTTGATCGGAAGCTGAATCATACCGATGCTGAAATCCAATCTGGTGAACATTTGCTGAT 42405 Query 1252 TGGTATGGACTTCAACGTCTTGAAGATGGCAGCTGTTGTTTATGTGATTCGAGATGGCAA 1311 ||| ||||| || ||||| |||| ||||| || | |||||||||||||| | || Sbjct 42406 TGGCATGGATTTTAACGTGCTGAAAATGGCCGCAGCGGTTTATGTGATTCGCCAGGGTGT 42465 Query 1312 GCCAAGAGCT-TTAGATGAGTTGGTCGGTGTGCGTGATACGCCAACAATGGCCGATCTAT 1370 ||||| ||| | |||||| | || || | | |||||||| |||||||| | || Sbjct 42466 GCCAA-TGCTACTTGATGAGATCGTGGGCGCAAGGGATACGCCGACAATGGC---GCAAT 42521 Query 1371 TAATTGAAAAG---TTCCCAAACCATGAGATGACAGTTATCCCTGATGCGGCAGGCCAAG 1427 | || || || | ||| |||| | || || | | || ||||| |||||||||| Sbjct 42522 TGATCAAAGAGCGCTACCCGTTCCATCAAATAACCATCTTTCCAGATGCAGCAGGCCAAG 42581 Query 1428 CTACTTCATCAAAAAAGAGTAGCGAATCTGATCATGCAATCTTGAGACAGAAGGGCTTAA 1487 | |||||||||||||| ||||| ||||| || ||||| ||| ||||| | ||||| | Sbjct 42582 CGACTTCATCAAAAAACAGTAGTGAATCAGACCATGCCATCCTGAGAGCGTCAGGCTTTA 42641 Query 1488 GGGTCGAAGTCAATTCAACAAACCCGAACATTAAAGACCGAATTAATGCAGTAAATGCTT 1547 | ||||| || |||||||| || ||||||||| | ||||| || |||||| Sbjct 42642 AACTTGAAGTAAACGGCACAAACCCAGCAATCAAAGACCGATTGAATGCGGTGAATGCTG 42701 Query 1548 TGATCTTAAATGGCAATGGTGAGCGAACACTCTTA---GTCAATACAAATAAATGCCCAA 1604 || | || || ||||| || | ||| || ||||| ||||||||||| | Sbjct 42702 CTATTTGCAACTCGAAAGGTGAACG---CTTGTTAAGGGTGAATACCAATAAATGCCCTA 42758 Query 1605 GACTCACAGAGACCTTTGAGCAGCAAGTTTATGACGATTTTGGAATGCCAGATAAGAAAT 1664 || ||||| | ||||||||||||| ||||||||||| || ||||||||||| || | Sbjct 42759 GAGCGACAGAAGCACTTGAGCAGCAAGTCTATGACGATTTCGGGATGCCAGATAAAAAGT 42818 Query 1665 CAGGCTTGGACCAT 1678 | || |||| ||| Sbjct 42819 CTGGACTGGATCAT 42832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130245074918486