Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq1420 109 2e-19 >seq1420 Length=85926 Score = 109 bits (120), Expect = 2e-19 Identities = 289/430 (67%), Gaps = 16/430 (4%) Strand=Plus/Minus Query 51915 GGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGT 51974 ||||||| |||||||| |||||||||||| | || | | || ||| | |||||| Sbjct 4309 GGCGTCACTATTTGGGATGAATGGGCGGATACGCAAGGCGATTTAGGCCCTATTTATGGT 4250 Query 51975 AAGCAGTGGCGTAGTTGGG--ATGCTGG-TGG-CGGCAAGGTCATCGATCAGATCCATGA 52030 ||| ||||| |||||| | || | ||| ||||| |||||||| || ||| Sbjct 4249 GTGCAATGGCGCAGTTGGCCAACGCCAGATGGTCGGCAT----ATCGATCAAATTACTGA 4194 Query 52031 AGTCGTCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATT-GTCTCTGCTTGGA 52089 ||| | ||| | || | | |||||| |||| || || || ||||||| Sbjct 4193 AGTAATTAAAACCATACGCGAAAACCCTGATTCAAGACG-CATGTTAGTGAGCGCTTGGA 4135 Query 52090 ATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATG 52149 |||| | ||||| | ||||||||| || || ||| || |||| || || || | Sbjct 4134 ATGTTTCACAACTGGATCAAATGGCGTTGATGCCATGTCATGCATTATTTCAGTTTTACG 4075 Query 52150 TAGCTGAAGGTAAGCTTTCG--TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGG 52207 | ||| | || ||| || ||||| | || ||||| ||| |||||||| || || Sbjct 4074 TTGCTAATGG--AGCGTTAAGCTGCCAGCTTTACCAGCGAAGTGCAGACATGTTTTTAGG 4017 Query 52208 CGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGTTGG 52267 || |||||||| |||||||||||| | || | || || || |||| | |||| Sbjct 4016 TGTGCCGTTTAATATTGCCAGCTATGCATTATTAACACACATGGTTGCAC-AGCAAACTA 3958 Query 52268 CCTTG-ATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATG 52326 ||| | || ||||| || || ||||||||||||||| ||| || || | || ||| Sbjct 3957 ATTTGCAAGTGGGTGACTTTATCTGGACTGGTGGCGACTGCCACATTTATGAAAATCATA 3898 Query 52327 TAGATCAGGT 52336 ||||| || Sbjct 3897 GCGATCAAGT 3888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190052041844530