Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2253 100 4e-16 seq6703 95.1 2e-14 >seq2253 Length=163492 Score = 100 bits (110), Expect = 4e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165784 CAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCT 165843 |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 120672 CAGTAGCTCATCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTAACAGGTTCGAGTCCT 120731 Query 165844 GTCTG 165848 ||||| Sbjct 120732 GTCTG 120736 >seq6703 Length=82049 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||||| |||||||||| |||||||||| ||||||||||| | |||||||||||||| Sbjct 37569 TTCCTCGATAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGAG 37628 Query 19808 CCCAGGTGGAGGAGC 19822 ||||||| ||||||| Sbjct 37629 CCCAGGTCGAGGAGC 37643 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||| |||||||||| |||||||||| ||||||||||| | ||||||||||||| Sbjct 37691 ATTCCCTGATAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCGCAGGTCCCTGGTTCGA 37750 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||| | ||||| Sbjct 37751 GCCCAGGTCGGGGAGC 37766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621918980288760