Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4404 102 8e-17 seq9646 96.9 4e-15 >seq4404 Length=3800 Score = 102 bits (112), Expect = 8e-17 Identities = 180/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| ||||||| || || |||| | ||||||||||| || || | |||||| || || Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||| || || ||||| || || | || |||| || |||||| || | || | | Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | |||||||| || ||||| ||||| ||||||||||||||| | || | ||| Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 23952 AAAATGTCTTTC---ATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATC 24008 ||||| | || |||||| | || |||||| | | || || || | ||| Sbjct 2226 GAAATGACGCTCGTTATCAGT---AAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATC 2170 Query 24009 AACTTCATCAACTGTCCAAAA 24029 ||||| ||||||||||| || Sbjct 2169 TACTTCCTCAACTGTCCAGAA 2149 >seq9646 Length=22407 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/110 (80%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 139414 AATATTTTTCCAACAGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATA 139473 |||||||| || || || || ||||| ||| ||||| |||| ||||| |||||| | Sbjct 12443 AATATTTTGG-AAGTGGAGTTCTGCATACCAAACTTTGGGTTGTCGATAACAAACATTTT 12501 Query 139474 TATATTGGAAGTGCTAACATGGACTGGCGATCACTAACTCAAGTAAAAGA 139523 || || |||||||| ||||||||||||||| | ||||| ||||| ||||| Sbjct 12502 TACATCGGAAGTGCCAACATGGACTGGCGAGCTCTAACGCAAGTGAAAGA 12551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521361063302200