Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 102 8e-17
seq9646 96.9 4e-15
>seq4404
Length=3800
Score = 102 bits (112), Expect = 8e-17
Identities = 180/261 (69%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831
|||| ||||||| || || |||| | ||||||||||| || || | |||||| || ||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891
||| || || ||||| || || | || |||| || |||||| || | || | |
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951
| |||||||| || ||||| ||||| ||||||||||||||| | || | |||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 23952 AAAATGTCTTTC---ATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATC 24008
||||| | || |||||| | || |||||| | | || || || | |||
Sbjct 2226 GAAATGACGCTCGTTATCAGT---AAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATC 2170
Query 24009 AACTTCATCAACTGTCCAAAA 24029
||||| ||||||||||| ||
Sbjct 2169 TACTTCCTCAACTGTCCAGAA 2149
>seq9646
Length=22407
Score = 96.9 bits (106), Expect = 4e-15
Identities = 88/110 (80%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 139414 AATATTTTTCCAACAGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATA 139473
|||||||| || || || || ||||| ||| ||||| |||| ||||| |||||| |
Sbjct 12443 AATATTTTGG-AAGTGGAGTTCTGCATACCAAACTTTGGGTTGTCGATAACAAACATTTT 12501
Query 139474 TATATTGGAAGTGCTAACATGGACTGGCGATCACTAACTCAAGTAAAAGA 139523
|| || |||||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct 12502 TACATCGGAAGTGCCAACATGGACTGGCGAGCTCTAACGCAAGTGAAAGA 12551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521361063302200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |