Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq489 113 3e-20 seq17788 93.3 3e-14 >seq489 Length=77466 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| |||||||| |||| ||| ||| | || ||||| ||||| |||||||| Sbjct 4429 CTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAA 4488 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| |||||| || |||| || | || || || ||| ||||| ||| | | Sbjct 4489 GATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATT 4548 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | | || ||||||| ||||| ||||| || ||||| || || || Sbjct 4549 CTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGAC 4608 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 4609 GAATATCTGCAT 4620 >seq17788 Length=7208 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || ||||| || ||||| | |||| || | || |||| ||| || || |||||| Sbjct 2388 TCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAAG 2329 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || ||||||| ||| | ||||| || ||| ||||| || | || Sbjct 2328 ATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTT 2269 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | | ||| ||||| | || || ||||| ||||||||||| || || Sbjct 2268 TCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACA 2209 Query 44327 AAGATTTGCATGATGT 44342 || || |||||| ||| Sbjct 2208 AAAATCTGCATGTTGT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359904964490841