Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq17788 167 6e-36
seq489 147 5e-30
>seq17788
Length=7208
Score = 167 bits (184), Expect = 6e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || ||||| ||||| || || || ||||| || ||||| ||| || |||
Sbjct 2201 CAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCGGAC 2260
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || |||||| ||||||||||||||||||||||| ||||| || || |||
Sbjct 2261 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAA 2320
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || |||||| | |||||||| | || || | |||||||| ||
Sbjct 2321 CGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAATATC 2380
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| |||||||| || ||||| | ||||||
Sbjct 2381 CAGAAAGAATCGACTTTGCATTTGGTTTTG 2410
>seq489
Length=77466
Score = 147 bits (162), Expect = 5e-30
Identities = 159/210 (76%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| ||||||||||| || || || || ||| | ||||| ||
Sbjct 4623 AAAATGC---AGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAG 4567
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| |||||||||||||| ||||| ||||| ||||||||||| || || || ||
Sbjct 4566 CCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCA 4507
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
||||| || || || ||||| ||||| || || || ||||||||| | || ||| ||||
Sbjct 4506 GACCAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGAC 4447
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||| | ||||| || || || ||||||
Sbjct 4446 TACAACATTCAAAAGGAGTCGACCCTGCAT 4417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203430871698762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |