Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq17788 167 6e-36 seq489 147 5e-30 >seq17788 Length=7208 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| ||||| || || || ||||| || ||||| ||| || ||| Sbjct 2201 CAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCGGAC 2260 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| ||||| || || ||| Sbjct 2261 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAA 2320 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || |||||| | |||||||| | || || | |||||||| || Sbjct 2321 CGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAATATC 2380 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||||| || ||||| | |||||| Sbjct 2381 CAGAAAGAATCGACTTTGCATTTGGTTTTG 2410 >seq489 Length=77466 Score = 147 bits (162), Expect = 5e-30 Identities = 159/210 (76%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| ||||||||||| || || || || ||| | ||||| || Sbjct 4623 AAAATGC---AGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAG 4567 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||||||||| ||||| ||||| ||||||||||| || || || || Sbjct 4566 CCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCA 4507 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || || || ||||| ||||| || || || ||||||||| | || ||| |||| Sbjct 4506 GACCAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGAC 4447 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| | ||||| || || || |||||| Sbjct 4446 TACAACATTCAAAAGGAGTCGACCCTGCAT 4417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203430871698762