Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_033829.1 Length=152388 Score E Sequences producing significant alignments: (Bits) Value seq16227 172 5e-38 seq17235 163 3e-35 seq11715 132 5e-26 seq13950 109 5e-19 seq16275 96.9 3e-15 seq13335 87.8 2e-12 seq13569 86.0 6e-12 >seq16227 Length=1397 Score = 172 bits (190), Expect = 5e-38 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 5931 TGATTAAAACCTTTAGATTGTTGGTCCGAAATGGTAGTACATATTATATTTGGATCCGGA 5990 |||||||||||||| |||||||| ||||| || || ||||| |||| ||||| | | Sbjct 655 TGATTAAAACCTTTCGATTGTTGATCCGATATCGTTGTACAATTTATGCCTGGATTTGTA 596 Query 5991 TTGCGGATTACTGAACATACGTACATGCATGTTGGTAAAATTGAAGGATCTCGTTTAACC 6050 ||||| || | |||||| |||||||||||||| |||||||| || ||||| ||||| ||| Sbjct 595 TTGCGTATAATTGAACAAACGTACATGCATGTCGGTAAAATCGATGGATCACGTTTCACC 536 Query 6051 ATTACTAAATCCAAATCATAATTCTCAGATTCTAATAAGTCGTACAGTGTTTGTGGCAAC 6110 || | ||||||||||||||| | ||| ||||| || |||| |||||||||| Sbjct 535 ATAGCCAAATCCAAATCATAACCATTTTGTTCCAATAAATCATACAAATTTTGTGGCAAT 476 Query 6111 ATTACCGAATAATACGGTAT 6130 | ||||||||||| ||||| Sbjct 475 ACAACCGAATAATATGGTAT 456 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 6246 TTTGAAGATTCGAAGCGTTTGTATCGTTCCAATATCGCTTGTGGTGTTGTTATAACGGCA 6305 || || ||||| || ||||| || ||||| ||| | || || | ||||||||| || Sbjct 277 TTCGATGATTCAAAACGTTTATAACGTTCAGCTATTGATTCCGGCGATGTTATAACAGCT 218 Query 6306 CGTATAAATGACATAAAATGATTATAAGATTGTTCGCGCCAAATTCTCGGATCAAATATT 6365 |||||||||||||| ||||||||| | |||||||| ||||| || || |||||||| || Sbjct 217 CGTATAAATGACATGAAATGATTAAACGATTGTTCACGCCATATCCTTGGATCAAAGATG 158 Query 6366 ATATACTCTTTACATTT 6382 | ||| ||||| ||| Sbjct 157 ACATAGCTTTTACCTTT 141 Score = 100 bits (110), Expect = 3e-16 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 5615 TTCAATGAGAGCACGTTGAAAATCATCATATTCATCACTTAAATACCCAGCCGATGCTTC 5674 || ||| ||||| |||| || ||||||||||||||||| | ||| ||||||||||| || Sbjct 1043 TTTAATCAGAGCTTGTTGGAATTCATCATATTCATCACTAAGATATCCAGCCGATGCATC 984 Query 5675 ATTCATAAATTTTTTACCGTATGAGTGTGTTTTACTATAAAATGGATC-CGATGCAAAAT 5733 |||||| || || ||| ||| | | ||||||| | |||| ||| ||||| || Sbjct 983 ATTCATGAAATTCTTATCGTCTTTATATGTTTTAGCAAAAAA---ATCTAAATGCATAA- 928 Query 5734 ATTCGGG---AAAACGAGCCACTTTTAACAAGCTCGTTTCAGATAGTAAATATCTAGGTG 5790 | ||| | |||||| || | ||||| | ||| || || ||||| ||||| | || | Sbjct 927 ACTCGTGTCCAAAACGTGCAATCTTTAATAGGCTTGTCTCTGATAGAAAATAACGTGGCG 868 Query 5791 TGCCAA 5796 | |||| Sbjct 867 TACCAA 862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 5316 TTGATATAAATATTTGAAAATAATGATACCAAATCATGAGCAGCGTATAAAGCGGCGAAT 5375 || || || ||||| ||||| ||| | | |||||| || || ||||||| || ||| Sbjct 1395 TTAATGTATATATTGGAAAAATGTGAAATTAGATCATGCGCTGCATATAAAGATGCAAAT 1336 Query 5376 TGCTTGCGACCGTTTCGACTCAGGTCTTGGCTCGATGTTATATATTTGTTGCACAAACCA 5435 ||||| || || || ||||| | ||||| || |||||||||||||| ||||| | | | Sbjct 1335 TGCTTACGTCCATTACGACTTAAATCTTGACTTGATGTTATATATTTATTGCATAGATCT 1276 Query 5436 AGCATCTCTTGTTTACGATCGTCCAATGT 5464 | ||| |||| |||||| | |||||| Sbjct 1275 AACATATCTTTGCGACGATCATGCAATGT 1247 >seq17235 Length=1135 Score = 163 bits (180), Expect = 3e-35 Identities = 314/455 (69%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 133812 TTTTGACAAAGATACATCGTACATTGAGAAGCGTGAAACTACGATTATACCAAAAAATTC 133871 |||||| | |||||| | || ||| | || || || || | |||||||||||| | Sbjct 795 TTTTGAAACTGATACACCATATATTAATAATAATGTTACGACAACGATACCAAAAAATGC 736 Query 133872 AAATCCCAATGAGGGGTATGCATTAGCAATAACTTCGATAGCCGAATCATGTAATGTATA 133931 | |||||||| || ||||| ||||| || || | |||| || | |||||| || Sbjct 735 AGCACCCAATGAAGGTTATGCCTTAGCGATTACAACTTTAGCTGATGCTTGTAATCCGTA 676 Query 133932 TCATGGTGATTTGA---TTTTAGTAACAGTTAACCCAGATAGTTCTGAATACAGTATGGT 133988 |||||||||||| | || || ||||| | ||| || | |||||| | ||| | Sbjct 675 TCATGGTGATTTTACACTTATAACAACAGATG--CCACATCGAA-TGAATATATGATGAT 619 Query 133989 TTGCGATTGCAAAAATCCTGGTTATATTGGTAATGAGAATCTAATGGGTAACTGTACAAC 134048 || |||| ||||||||||| |||||||| ||||||||| || ||| ||| ||||||| Sbjct 618 ATGTAATTGTAAAAATCCTGGCTATATTGGCAATGAGAATTTATTGGATAATTGTACAAA 559 Query 134049 GGTATATATTTGTGATGGTCGTATTGACAATATCAATCAACCATTAGCTAATATATCATG 134108 || | || ||| |||| ||||| |||||| ||||||| || | || || | || Sbjct 558 TGTTTTCATATGTAATGGCAAAATTGATAATATCGATCAACCGTTGTCAAAAAT-TAAT- 501 Query 134109 TGTATGTGATC-GCGGAT-ACAAATCAATGCGTTATGATGACGGTCTACCAGTTTGTCGT 134166 ||| || || || || | ||| || || |||||||| || ||||||| ||| Sbjct 500 TGTCAATGTTCAGCATATGAAAAAAGTATACGCTATGATGATGGCTTACCAGTATGTAAG 441 Query 134167 GAGATGACCGTTCTCGAAGCAAATCAAGCATACAAAGATTGGACTTCACTTGTAAAATTT 134226 || | || ||||||| ||| || ||||| ||||||| | | || || ||| Sbjct 440 GAATTATTAGTAATCGAAGCTAATGAATTATACACAGATTGGTCGAATTTAGTGAATTTT 381 Query 134227 AACTCGGACCGTCAATTGGATATCATTAATTTCAA 134261 | || || |||||||||| | | |||||||| Sbjct 380 ACTTCTGATCGTCAATTGGCAACGAAAAATTTCAA 346 >seq11715 Length=1673 Score = 132 bits (146), Expect = 5e-26 Identities = 196/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 21735 ATTTTCATTGTAGCGTTGGTTATCGAAATTTCGATCAGAATCATATGGTACGCACAAAAC 21794 |||| ||||| | || | ||||| || || ||||| ||| ||||| || | || Sbjct 729 ATTTGCATTGAAACGATCATTATCAAATTTGCGATCTCTTGTATACGGTACACATATAAT 670 Query 21795 TTTCCATCCAAACAAACGAGCTACGGTATAATAGACCATAAATTGTACGATAGGGTACAT 21854 |||||| ||||| || | | | ||||| || | |||||||||| | || || ||||| Sbjct 669 TTTCCAGCCAAATAATACACCAATTGTATAGTACATCATAAATTGTGCAATTGGATACAT 610 Query 21855 ATATATGCGAGCACGATGAGCATCTCCAGATTCGCAACGTTTCATTTGCCGTTCTCGATT 21914 | | || || |||||||| ||||| |||||||| | ||| |||| ||| |||| ||||| Sbjct 609 AAAGATACGTGCACGATGCGCATCACCAGATTCACTACGATTCAATTGACGTTGACGATT 550 Query 21915 TAACTTGACGTAAGGATCGATAAATATCAAACCTTTTTGTGAAATGTATTGCGCAATCGA 21974 || | || ||||| |||||||| | ||||||||||| || || | | || | Sbjct 549 CAATTCCGGATATGGATCAATAAATATAACGCCTTTTTGTGATATATACTCCATTATGGC 490 Query 21975 TGGTTCGTTAAAATTGGCATTGAAGAATGAAAACATAT 22012 ||| || || ||||| | || || || ||||||| Sbjct 489 TGGCTCATTGAAATTTGAATCTAAAAAATTCAACATAT 452 >seq13950 Length=2029 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140659 TCACCAGTGTTGATTATTTCATTTAAAGATTCCTGTGGCGTCATTTCATAGCAATACATA 140718 |||||||| | || ||| || || ||||| | ||| | |||| ||| ||||||||| Sbjct 325 TCACCAGTAGTTATAATTGTATCCAAGGATTCGTTTGGTGAAATTTTATAACAATACATA 384 Query 140719 AACAATACAGTACGAACCATAGAGTACATATCTGTCTCAGTATATCTAATTTTTTCGTCC 140778 || ||||||||||| || || | ||||| || || |||||||| | |||||||| || Sbjct 385 AATAATACAGTACGTACAATTGCATACATGTCAGTTTCAGTATAACGGATTTTTTCATCT 444 Query 140779 GATCTTGGCACTTTTGATAAATAATAATTCGTTTTTAA 140816 ||||| | ||||||| |||||| ||| ||||||| Sbjct 445 GATCTGGATACTTTTGTCAAATAACCATTATTTTTTAA 482 >seq16275 Length=1788 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 71844 TTCGCCAAACAGAGTTTCTGGTAAAATCTGAGCTTTAACCAATTTTTCATCATGGAAATC 71903 ||||||||| | || || ||||||| | |||| | ||||| ||||||| ||||| Sbjct 958 TTCGCCAAATAATGTCTCGGGTAAAACATTGCATTTAGCGAATTTATCATCATTAAAATC 899 Query 71904 TTCA-CATCGTTTAATCCAACCACGAGGGATTGAATTGATAATGTCTCGATCTTT----- 71957 |||| ||| |||||| ||| |||| || || ||||| | || || |||||||| Sbjct 898 TTCAGCAT-GTTTAACCCATGCACGTGGTATAGAATTAAGTATTTCGCGATCTTTGTCTT 840 Query 71958 -AACAAATTTCAACATTTGTACGAATGGCAATAGTTCGTAATATACTGG 72005 ||||||||||||||||| ||| ||||| | ||| ||||| | ||| Sbjct 839 TAACAAATTTCAACATTTTTACAAATGGTGTCAATTCATAATAAATTGG 791 >seq13335 Length=1500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/205 (71%), Gaps = 12/205 (6%) Strand=Plus/Plus Query 120559 TAGTCGTCTTTACATACCATCGATTTTCATTTTGTACGACTGTTAAATAACCAGAGCCAA 120618 |||| || || ||||||||||||| |||||| |||| |||||| | ||||| | Sbjct 617 TAGTTGTTTTAACATACCATCGATCTTCATTGTGTATGACTGTAATGTAACCGTTG---- 672 Query 120619 GACTGAC-ATTAG---TATTCGACGTTTCTACTCTTTTATATCGACATACTATATTTCTG 120674 | ||||| ||| | |||| | | ||| ||||||| || |||||| |||| | Sbjct 673 GTCTGACTATTTGGTTTATTTGTTGGGCATACCTTTTTATAGCGTGATACTAAATTTGTA 732 Query 120675 TCAACAACATAATCGACATTGAGATTCAA-ACG-ACGAGCCAATTCGAAAATATAATCCA 120732 | || ||| |||| ||||| | |||||| || || |||||||| || |||||||| Sbjct 733 TTAATTACAAAATCAACATTTAAATTCAATTCGTAC--GCCAATTCAAATATATAATCAT 790 Query 120733 TGTAACCATTGCTACGCAAACGATG 120757 ||||||| | || | |||||||| Sbjct 791 CGTAACCACTACTCCTTAAACGATG 815 >seq13569 Length=2353 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39786 GTTATTGTGACTCTGGTTGCTGATAAATTAACTTCCAACAAATCGCTCAGACATCCAAGT 39845 |||||||| || | ||||||||||| ||||| ||||||| | || ||||||||| Sbjct 671 GTTATTGTTACAATAATTGCTGATAAAATAACTATACACAAATCATTAAGGCATCCAAGT 612 Query 39846 TTATATAAAATTCGAAATGATTTAACTGATATCGATGTTGGAAAATTCCTATAAATATTC 39905 |||||| ||||| |||||||||| | ||| || ||| ||||| ||||| |||| Sbjct 611 TTATATCGTATTCGTAATGATTTAAATTCTATAAATATTGATAAATTTTTATAACTATTA 552 Query 39906 TA 39907 || Sbjct 551 TA 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487394933095840