Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_033829.1
Length=152388
Score E
Sequences producing significant alignments: (Bits) Value
seq16227 172 5e-38
seq17235 163 3e-35
seq11715 132 5e-26
seq13950 109 5e-19
seq16275 96.9 3e-15
seq13335 87.8 2e-12
seq13569 86.0 6e-12
>seq16227
Length=1397
Score = 172 bits (190), Expect = 5e-38
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 5931 TGATTAAAACCTTTAGATTGTTGGTCCGAAATGGTAGTACATATTATATTTGGATCCGGA 5990
|||||||||||||| |||||||| ||||| || || ||||| |||| ||||| | |
Sbjct 655 TGATTAAAACCTTTCGATTGTTGATCCGATATCGTTGTACAATTTATGCCTGGATTTGTA 596
Query 5991 TTGCGGATTACTGAACATACGTACATGCATGTTGGTAAAATTGAAGGATCTCGTTTAACC 6050
||||| || | |||||| |||||||||||||| |||||||| || ||||| ||||| |||
Sbjct 595 TTGCGTATAATTGAACAAACGTACATGCATGTCGGTAAAATCGATGGATCACGTTTCACC 536
Query 6051 ATTACTAAATCCAAATCATAATTCTCAGATTCTAATAAGTCGTACAGTGTTTGTGGCAAC 6110
|| | ||||||||||||||| | ||| ||||| || |||| ||||||||||
Sbjct 535 ATAGCCAAATCCAAATCATAACCATTTTGTTCCAATAAATCATACAAATTTTGTGGCAAT 476
Query 6111 ATTACCGAATAATACGGTAT 6130
| ||||||||||| |||||
Sbjct 475 ACAACCGAATAATATGGTAT 456
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 6246 TTTGAAGATTCGAAGCGTTTGTATCGTTCCAATATCGCTTGTGGTGTTGTTATAACGGCA 6305
|| || ||||| || ||||| || ||||| ||| | || || | ||||||||| ||
Sbjct 277 TTCGATGATTCAAAACGTTTATAACGTTCAGCTATTGATTCCGGCGATGTTATAACAGCT 218
Query 6306 CGTATAAATGACATAAAATGATTATAAGATTGTTCGCGCCAAATTCTCGGATCAAATATT 6365
|||||||||||||| ||||||||| | |||||||| ||||| || || |||||||| ||
Sbjct 217 CGTATAAATGACATGAAATGATTAAACGATTGTTCACGCCATATCCTTGGATCAAAGATG 158
Query 6366 ATATACTCTTTACATTT 6382
| ||| ||||| |||
Sbjct 157 ACATAGCTTTTACCTTT 141
Score = 100 bits (110), Expect = 3e-16
Identities = 136/186 (73%), Gaps = 8/186 (4%)
Strand=Plus/Minus
Query 5615 TTCAATGAGAGCACGTTGAAAATCATCATATTCATCACTTAAATACCCAGCCGATGCTTC 5674
|| ||| ||||| |||| || ||||||||||||||||| | ||| ||||||||||| ||
Sbjct 1043 TTTAATCAGAGCTTGTTGGAATTCATCATATTCATCACTAAGATATCCAGCCGATGCATC 984
Query 5675 ATTCATAAATTTTTTACCGTATGAGTGTGTTTTACTATAAAATGGATC-CGATGCAAAAT 5733
|||||| || || ||| ||| | | ||||||| | |||| ||| ||||| ||
Sbjct 983 ATTCATGAAATTCTTATCGTCTTTATATGTTTTAGCAAAAAA---ATCTAAATGCATAA- 928
Query 5734 ATTCGGG---AAAACGAGCCACTTTTAACAAGCTCGTTTCAGATAGTAAATATCTAGGTG 5790
| ||| | |||||| || | ||||| | ||| || || ||||| ||||| | || |
Sbjct 927 ACTCGTGTCCAAAACGTGCAATCTTTAATAGGCTTGTCTCTGATAGAAAATAACGTGGCG 868
Query 5791 TGCCAA 5796
| ||||
Sbjct 867 TACCAA 862
Score = 93.3 bits (102), Expect = 4e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 5316 TTGATATAAATATTTGAAAATAATGATACCAAATCATGAGCAGCGTATAAAGCGGCGAAT 5375
|| || || ||||| ||||| ||| | | |||||| || || ||||||| || |||
Sbjct 1395 TTAATGTATATATTGGAAAAATGTGAAATTAGATCATGCGCTGCATATAAAGATGCAAAT 1336
Query 5376 TGCTTGCGACCGTTTCGACTCAGGTCTTGGCTCGATGTTATATATTTGTTGCACAAACCA 5435
||||| || || || ||||| | ||||| || |||||||||||||| ||||| | | |
Sbjct 1335 TGCTTACGTCCATTACGACTTAAATCTTGACTTGATGTTATATATTTATTGCATAGATCT 1276
Query 5436 AGCATCTCTTGTTTACGATCGTCCAATGT 5464
| ||| |||| |||||| | ||||||
Sbjct 1275 AACATATCTTTGCGACGATCATGCAATGT 1247
>seq17235
Length=1135
Score = 163 bits (180), Expect = 3e-35
Identities = 314/455 (69%), Gaps = 10/455 (2%)
Strand=Plus/Minus
Query 133812 TTTTGACAAAGATACATCGTACATTGAGAAGCGTGAAACTACGATTATACCAAAAAATTC 133871
|||||| | |||||| | || ||| | || || || || | |||||||||||| |
Sbjct 795 TTTTGAAACTGATACACCATATATTAATAATAATGTTACGACAACGATACCAAAAAATGC 736
Query 133872 AAATCCCAATGAGGGGTATGCATTAGCAATAACTTCGATAGCCGAATCATGTAATGTATA 133931
| |||||||| || ||||| ||||| || || | |||| || | |||||| ||
Sbjct 735 AGCACCCAATGAAGGTTATGCCTTAGCGATTACAACTTTAGCTGATGCTTGTAATCCGTA 676
Query 133932 TCATGGTGATTTGA---TTTTAGTAACAGTTAACCCAGATAGTTCTGAATACAGTATGGT 133988
|||||||||||| | || || ||||| | ||| || | |||||| | ||| |
Sbjct 675 TCATGGTGATTTTACACTTATAACAACAGATG--CCACATCGAA-TGAATATATGATGAT 619
Query 133989 TTGCGATTGCAAAAATCCTGGTTATATTGGTAATGAGAATCTAATGGGTAACTGTACAAC 134048
|| |||| ||||||||||| |||||||| ||||||||| || ||| ||| |||||||
Sbjct 618 ATGTAATTGTAAAAATCCTGGCTATATTGGCAATGAGAATTTATTGGATAATTGTACAAA 559
Query 134049 GGTATATATTTGTGATGGTCGTATTGACAATATCAATCAACCATTAGCTAATATATCATG 134108
|| | || ||| |||| ||||| |||||| ||||||| || | || || | ||
Sbjct 558 TGTTTTCATATGTAATGGCAAAATTGATAATATCGATCAACCGTTGTCAAAAAT-TAAT- 501
Query 134109 TGTATGTGATC-GCGGAT-ACAAATCAATGCGTTATGATGACGGTCTACCAGTTTGTCGT 134166
||| || || || || | ||| || || |||||||| || ||||||| |||
Sbjct 500 TGTCAATGTTCAGCATATGAAAAAAGTATACGCTATGATGATGGCTTACCAGTATGTAAG 441
Query 134167 GAGATGACCGTTCTCGAAGCAAATCAAGCATACAAAGATTGGACTTCACTTGTAAAATTT 134226
|| | || ||||||| ||| || ||||| ||||||| | | || || |||
Sbjct 440 GAATTATTAGTAATCGAAGCTAATGAATTATACACAGATTGGTCGAATTTAGTGAATTTT 381
Query 134227 AACTCGGACCGTCAATTGGATATCATTAATTTCAA 134261
| || || |||||||||| | | ||||||||
Sbjct 380 ACTTCTGATCGTCAATTGGCAACGAAAAATTTCAA 346
>seq11715
Length=1673
Score = 132 bits (146), Expect = 5e-26
Identities = 196/278 (71%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 21735 ATTTTCATTGTAGCGTTGGTTATCGAAATTTCGATCAGAATCATATGGTACGCACAAAAC 21794
|||| ||||| | || | ||||| || || ||||| ||| ||||| || | ||
Sbjct 729 ATTTGCATTGAAACGATCATTATCAAATTTGCGATCTCTTGTATACGGTACACATATAAT 670
Query 21795 TTTCCATCCAAACAAACGAGCTACGGTATAATAGACCATAAATTGTACGATAGGGTACAT 21854
|||||| ||||| || | | | ||||| || | |||||||||| | || || |||||
Sbjct 669 TTTCCAGCCAAATAATACACCAATTGTATAGTACATCATAAATTGTGCAATTGGATACAT 610
Query 21855 ATATATGCGAGCACGATGAGCATCTCCAGATTCGCAACGTTTCATTTGCCGTTCTCGATT 21914
| | || || |||||||| ||||| |||||||| | ||| |||| ||| |||| |||||
Sbjct 609 AAAGATACGTGCACGATGCGCATCACCAGATTCACTACGATTCAATTGACGTTGACGATT 550
Query 21915 TAACTTGACGTAAGGATCGATAAATATCAAACCTTTTTGTGAAATGTATTGCGCAATCGA 21974
|| | || ||||| |||||||| | ||||||||||| || || | | || |
Sbjct 549 CAATTCCGGATATGGATCAATAAATATAACGCCTTTTTGTGATATATACTCCATTATGGC 490
Query 21975 TGGTTCGTTAAAATTGGCATTGAAGAATGAAAACATAT 22012
||| || || ||||| | || || || |||||||
Sbjct 489 TGGCTCATTGAAATTTGAATCTAAAAAATTCAACATAT 452
>seq13950
Length=2029
Score = 109 bits (120), Expect = 5e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 140659 TCACCAGTGTTGATTATTTCATTTAAAGATTCCTGTGGCGTCATTTCATAGCAATACATA 140718
|||||||| | || ||| || || ||||| | ||| | |||| ||| |||||||||
Sbjct 325 TCACCAGTAGTTATAATTGTATCCAAGGATTCGTTTGGTGAAATTTTATAACAATACATA 384
Query 140719 AACAATACAGTACGAACCATAGAGTACATATCTGTCTCAGTATATCTAATTTTTTCGTCC 140778
|| ||||||||||| || || | ||||| || || |||||||| | |||||||| ||
Sbjct 385 AATAATACAGTACGTACAATTGCATACATGTCAGTTTCAGTATAACGGATTTTTTCATCT 444
Query 140779 GATCTTGGCACTTTTGATAAATAATAATTCGTTTTTAA 140816
||||| | ||||||| |||||| ||| |||||||
Sbjct 445 GATCTGGATACTTTTGTCAAATAACCATTATTTTTTAA 482
>seq16275
Length=1788
Score = 96.9 bits (106), Expect = 3e-15
Identities = 124/169 (73%), Gaps = 8/169 (5%)
Strand=Plus/Minus
Query 71844 TTCGCCAAACAGAGTTTCTGGTAAAATCTGAGCTTTAACCAATTTTTCATCATGGAAATC 71903
||||||||| | || || ||||||| | |||| | ||||| ||||||| |||||
Sbjct 958 TTCGCCAAATAATGTCTCGGGTAAAACATTGCATTTAGCGAATTTATCATCATTAAAATC 899
Query 71904 TTCA-CATCGTTTAATCCAACCACGAGGGATTGAATTGATAATGTCTCGATCTTT----- 71957
|||| ||| |||||| ||| |||| || || ||||| | || || ||||||||
Sbjct 898 TTCAGCAT-GTTTAACCCATGCACGTGGTATAGAATTAAGTATTTCGCGATCTTTGTCTT 840
Query 71958 -AACAAATTTCAACATTTGTACGAATGGCAATAGTTCGTAATATACTGG 72005
||||||||||||||||| ||| ||||| | ||| ||||| | |||
Sbjct 839 TAACAAATTTCAACATTTTTACAAATGGTGTCAATTCATAATAAATTGG 791
>seq13335
Length=1500
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/205 (71%), Gaps = 12/205 (6%)
Strand=Plus/Plus
Query 120559 TAGTCGTCTTTACATACCATCGATTTTCATTTTGTACGACTGTTAAATAACCAGAGCCAA 120618
|||| || || ||||||||||||| |||||| |||| |||||| | ||||| |
Sbjct 617 TAGTTGTTTTAACATACCATCGATCTTCATTGTGTATGACTGTAATGTAACCGTTG---- 672
Query 120619 GACTGAC-ATTAG---TATTCGACGTTTCTACTCTTTTATATCGACATACTATATTTCTG 120674
| ||||| ||| | |||| | | ||| ||||||| || |||||| |||| |
Sbjct 673 GTCTGACTATTTGGTTTATTTGTTGGGCATACCTTTTTATAGCGTGATACTAAATTTGTA 732
Query 120675 TCAACAACATAATCGACATTGAGATTCAA-ACG-ACGAGCCAATTCGAAAATATAATCCA 120732
| || ||| |||| ||||| | |||||| || || |||||||| || ||||||||
Sbjct 733 TTAATTACAAAATCAACATTTAAATTCAATTCGTAC--GCCAATTCAAATATATAATCAT 790
Query 120733 TGTAACCATTGCTACGCAAACGATG 120757
||||||| | || | ||||||||
Sbjct 791 CGTAACCACTACTCCTTAAACGATG 815
>seq13569
Length=2353
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 39786 GTTATTGTGACTCTGGTTGCTGATAAATTAACTTCCAACAAATCGCTCAGACATCCAAGT 39845
|||||||| || | ||||||||||| ||||| ||||||| | || |||||||||
Sbjct 671 GTTATTGTTACAATAATTGCTGATAAAATAACTATACACAAATCATTAAGGCATCCAAGT 612
Query 39846 TTATATAAAATTCGAAATGATTTAACTGATATCGATGTTGGAAAATTCCTATAAATATTC 39905
|||||| ||||| |||||||||| | ||| || ||| ||||| ||||| ||||
Sbjct 611 TTATATCGTATTCGTAATGATTTAAATTCTATAAATATTGATAAATTTTTATAACTATTA 552
Query 39906 TA 39907
||
Sbjct 551 TA 550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 487394933095840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |