Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq183 116 4e-21 >seq183 Length=738700 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || ||||| ||||||||| |||||||| || |||| || ||||| | Sbjct 171081 GGTCCCTGATGTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTG 171022 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 | |||||||| || || || |||| |||||| | || ||| || || | |||| | || Sbjct 171021 CAATCTGAAAGCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTT 170962 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 | | |||||||| || || ||||| || || || || || ||||||| |||||||| Sbjct 170961 CAACCAGATTTTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAA 170902 Query 17406 TGAA 17409 |||| Sbjct 170901 TGAA 170898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517498063436640