Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1173 96.9 3e-15 >seq1173 Length=128733 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 ||||| ||||| || || | | ||| || ||||| ||||| || || || | ||| Sbjct 62616 TGAGCTATCATATGTGTCAATATGGCATAACTGGCAATATTAAAAGGTACACCAAGTCCC 62675 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 |||||||| ||||||||||| | ||||||| || || ||| | |||| ||| ||| Sbjct 62676 ATATCAGCACTTCTTTGATACAATAGACAGGAGAGTTTATCATTAGCTACATGAAACTGA 62735 Query 101879 CTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACA 101937 || || ||| ||||| || || |||||||| || || || ||||| | ||| Sbjct 62736 -GCAAGACAATGGCAAGGTGGTAATGCCATTTTATCAAGATCAGATGGGTTCCAGGAACA 62794 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTT 101969 |||||| || ||||| |||| ||||||||| Sbjct 62795 CATTAATATTCTTCTGTCTG-CTGGTTTGTTT 62825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361218848600348