Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq401 542 3e-149 seq183 134 2e-26 seq1092 102 1e-16 >seq401 Length=384550 Score = 542 bits (600), Expect = 3e-149 Identities = 1207/1792 (67%), Gaps = 52/1792 (3%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||| | || |||||||||| | || || ||||| || || | ||| |||||||| Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| || || | ||||| | | |||||| ||| ||| | ||| |||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | ||| ||||| | ||| || |||||||| || || || ||||| || || ||| Sbjct 356897 TCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCC 356956 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 |||| || |||| || || ||||||||| | ||||| || || || | || | || Sbjct 356957 ATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT-TC 357015 Query 53038 TTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCAT-AATCCTA---TTCT 53090 || ||||| || |||| ||||| || ||||| | || ||| || || | Sbjct 357016 TTTTGGAATTCTTTCGATATTTTGAATTGA---ACCAT-TGTTATGAATGATAAGGTTTT 357071 Query 53091 TGATCTCATCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 53149 | || || |||| ||||| || | || || ||||| || | | ||||| | || ||| Sbjct 357072 TCATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAGATGATGGTTCACT 357130 Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 |||||||||||||| ||||| ||||| | || || || ||| | ||||| | Sbjct 357131 ACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAG 357190 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || ||||||||||| | |||||| || || ||||| || |||||||| || | | ||| Sbjct 357191 GATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAA 357250 Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 53329 || | ||| |||| | | ||||| |||||||||| ||||||||||||| ||| Sbjct 357251 GAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCC 357310 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 53388 | |||| ||| | |||||| |||||| | | | || | Sbjct 357311 GTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTATTTTTA 357370 Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 | | ||| |||| ||||| || || |||| |||||| || || ||||| || || || Sbjct 357371 A-AGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATA 357429 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGGA 53506 |||||| || || || || | | ||||| | ||| || || || ||| ||||| Sbjct 357430 ATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCA--CTTTCATATGGA 357487 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 ||| | | || || | || || || |||||||||||||| || || ||||| ||| Sbjct 357488 TAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGT 357547 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 ||| | || || ||| ||||||||||| ||||| ||||| | ||| |||||||| || Sbjct 357548 CTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTT 357607 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT--CAAATTGT-CCA 53683 | ||| | |||| ||| || ||||| | || ||||| || || | | Sbjct 357608 AAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCT 357667 Query 53684 TCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCA 53743 || | ||||||||||| | || || ||||| | |||||| || || || |||| | Sbjct 357668 TCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCAT---CT 357724 Query 53744 TCC---GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 ||| | |||| || || || ||||| ||||| ||||| || || || || | ||| Sbjct 357725 TCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTT 357784 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 |||||||| || ||| ||||||| | || ||||| || || ||||| || ||||| || Sbjct 357785 TGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCT 357844 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGA------CACGAGCCTTTATTATAGATTTG 53914 | || | || || || |||||||| | | ||||| | | | | | | Sbjct 357845 ACTTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTAACA------ 357898 Query 53915 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTG 53974 || |||| ||| ||| ||| || |||||| ||||| || |||||||| | Sbjct 357899 TACTTCTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCA 357958 Query 53975 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 54034 | | |||||| | | | |||||||| | ||| | | ||| | | |||| Sbjct 357959 GCGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTC 358018 Query 54035 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 ||||| || | |||||||||||||||||| ||| || || ||||||| | ||| || Sbjct 358019 TTCATGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTTC 358077 Query 54094 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 54153 || |||||||||||||| || || | || | | |||||||| |||||| ||||| || Sbjct 358078 TTTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAA 358137 Query 54154 GTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 54213 || || | | | || || | ||| ||||| || ||||| | ||||| || || || Sbjct 358138 ATAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATT 358197 Query 54214 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 || || || || ||||| || | | ||||| || | ||||| || |||| ||||| Sbjct 358198 GTTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATA 358257 Query 54274 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 |||| | || | ||| | || |||||| || || ||||| || || || Sbjct 358258 TGTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATAT 358317 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 54393 |||||| | | |||| ||||||||||| ||||| ||||| ||||| |||| || Sbjct 358318 TAATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAAT 358377 Query 54394 TAGAAAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAG-GTAGGAG 54449 || |||||| ||||| | ||| | ||| ||| | || | | | ||| || ||| Sbjct 358378 TAAAAAACAAGAAGACA---GCTGAGGTCTAGGTGTTGCTGC-TGAGAAAAGAGTTGGAC 358433 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 || || ||||| |||||||||| | | |||||| |||| ||| || | ||||| | Sbjct 358434 TGGCATGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGT 358493 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 | | ||| || || | ||| || | ||||||||| || || || || || Sbjct 358494 CATCTCCATGTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| ||||| || || || | ||| ||| ||||||||||||||||||||||||||||||| Sbjct 358658 CTTATTGTTAATCTTGAGAAGGTATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 358717 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGA 54657 | |||||| | || || | ||| |||| Sbjct 358718 TTTAAAGTCCCTGTCATATACAATTGCTGA 358747 >seq183 Length=738700 Score = 134 bits (148), Expect = 2e-26 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || ||| | ||| ||| || || || || |||||||| || | ||||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| || ||||| |||||| ||||||||||| || || || ||||| | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 24277 CAATAAGTCTTTCTCCATAACCGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGG 24333 | | || |||||| ||| | || | | | | || |||||||| |||||||||| | Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTG 171332 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||||||| |||||||| || | ||||||| |||||| || Sbjct 171331 CCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAA 171292 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 ||||||||||| | || ||||||||| ||||| | ||||| || || || ||||| Sbjct 171070 TATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAG 171011 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || ||||||||||| || || || | ||||| ||| | || | ||| | | |||| Sbjct 171010 CCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTT 170951 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 ||||| ||||| || || || ||||| || ||||||||||| || || || Sbjct 170950 TCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| ||||||||||| || ||||| || || || ||||||||||||||||| | | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || || | |||||||| ||||| |||||||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACAAA 170591 >seq1092 Length=556928 Score = 102 bits (112), Expect = 1e-16 Identities = 242/365 (66%), Gaps = 3/365 (1%) Strand=Plus/Plus Query 147331 ATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAA 147390 |||||||| ||| || |||||||| || | ||| | || | | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 147391 AAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCAT 147450 || | |||| || |||||| ||||| | || || ||||| ||| | || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 147451 AAAAATAATAACGAGTTTGCCTTTTTTAGTAGAAACATGAAACCAGTACTCTCTTATAAA 147510 ||||| ||| |||||| | |||| | || | || |||||| | || ||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 147511 GTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTG 147570 || || || | ||||| || |||| |||||||| ||||| ||| | ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 147571 GATTCTGAAATTGTTCTTGTAGACGAACATAATGTACAGC---TCCCGTTTGGAAGTTTA 147627 ||| | ||| | | | ||||| | | | | | | | | |||||||| | |||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAAACCATTACCGTTTGGCACTTTA 531659 Query 147628 GGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTTGTGTTTGACTGT 147687 ||| |||| ||| || ||| | |||| | | | | || || | | ||||||||| Sbjct 531660 GGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTGT 531719 Query 147688 TTGTA 147692 ||||| Sbjct 531720 TTGTA 531724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593667066671040