Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq326 291 7e-74 seq53 93.3 4e-14 >seq326 Length=503882 Score = 291 bits (322), Expect = 7e-74 Identities = 723/1081 (67%), Gaps = 35/1081 (3%) Strand=Plus/Minus Query 105515 TTTG-AATTTGACGATAATCTACAACACCGTCCTCCCACGTGCCCGACCCCGGCCC-GTT 105572 |||| ||||| | ||||| || ||||| |||| ||| |||||| | || || ||| Sbjct 281430 TTTGCAATTTCCCTGTAATCGACCACACCATCCTGCCATGTGCCCTTGCAAGGTCCTGTT 281371 Query 105573 GCCAGTGCCGGAAAAATAGTTGTCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCC 105632 || | ||| ||| | || ||| |||||||| ||| |||||||| || || || Sbjct 281370 GCGATCCCCGTGAAAGGA-TTACCATCTGTATAATTGTGTACTCCGGTCCACCCACGTCC 281312 Query 105633 GTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTTCAGTAACGCATC 105692 ||||| || || || || | ||||| || || | || ||||| || || | Sbjct 281311 ATACATTGCAACACCTACGACAATTTTCTTCGGGTTTACACCTTGAGCCAATAGGTACTG 281252 Query 105693 GACAGCGTAGTGTGTAGTGTATAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGT 105752 ||| || ||| ||| || || || | |||||||| || || || | || || Sbjct 281251 AACACCGAAGTCTGTGGTATAAGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGT 281192 Query 105753 TTGGTAGCCCAAATCCGTGTTTG-ACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATA 105811 ||| | | || ||| | ||| ||||||| || ||||| ||||| ||||| | ||| | Sbjct 281191 TTGAT-GACCTAATGTATCATTGGACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAA 281133 Query 105812 TTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCG 105871 | | | | | | || ||||| | ||||| ||| || || ||||| | || | Sbjct 281132 TATGGTCCATGTAATTCTGCGCAGCTTTGTAGTCTACAACTTGGATTTTGTCCCATCCAG 281073 Query 105872 CGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCGCTTCGAGG--TCGTCTAG 105929 | || ||||| |||||||||||| | |||| ||| || || |||| || Sbjct 281072 CACTAATAGCTGATGTTAATTCGTACTTCTTGCCCATTTCA--TTGGATAATTCGTTAAG 281015 Query 105930 CATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTTTGGCGTCACCGTCC---GCATC 105986 |||| | || ||||||| || || |||| || | | ||||| ||| | | | Sbjct 281014 CATTTCTCGAAGCTCCTTCATTAATAAAACATA------GACTTCACCATCCTTAGGACC 280961 Query 105987 GCCCAACGACGGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTC 106046 || | | |||||| || || || || || || || ||||| || ||||||||||| || Sbjct 280960 ACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATC 280901 Query 106047 AAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTC 106106 || |||||||| ||| || || || || || || || | ||| ||| ||| Sbjct 280900 GAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCTCTTT-- 280843 Query 106107 AACATCGTGCATAAAATAA----AATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAA 106162 || | || ||| || || ||||| || | || ||||| || || || ||||||| Sbjct 280842 -ACCTTGT-CATCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAA 280785 Query 106163 GAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTAT 106222 |||| |||| || || ||||| |||| | ||||||||| ||||| |||||||| | Sbjct 280784 GAATCTTTAGATCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGT 280725 Query 106223 ACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGT 106282 | || || ||||| | || | |||||||| |||||||||| ||| ||||| || |||| Sbjct 280724 ATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGT 280665 Query 106283 GAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTC 106342 |||||| ||||| || ||||| || || |||| ||||| || || | || || |||| Sbjct 280664 GAATGGATACTTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTC 280605 Query 106343 CGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCAT 106402 | || ||| | |||||| |||||||| || || || || || || ||||| | Sbjct 280604 CCTCAATTTCTTTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGT 280545 Query 106403 ACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACA 106462 |||| | || | |||||| || | || | ||| |||||| | || | || | Sbjct 280544 ACAAAAGATGAGTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAA 280485 Query 106463 CACCCCACTCAACAAAGTACGCAGCGACAATTTTATCC-----TCTCTCCTGCCAGGTTT 106517 | ||||| ||||||||||| ||| | |||| || ||| ||| | || || || Sbjct 280484 CTCCCCATTCAACAAAGTAAGCACCAACAACCTT-TCCAGACGTCTGT-TTGAATGGCTT 280427 Query 106518 GTTGTTTTCCAGCCA-TGTGTATTCGAGCGGTGCCAGATGGCCGCCGTCGGTGTCTGCGA 106576 |||||| || ||| ||||| || || |||| | ||||| || || ||||| || | Sbjct 280426 -ATGTTTTTCATCCAGAGTGTAATCTAGGGGTGGTAAATGGCTACCATCTGTGTCGGCAA 280368 Query 106577 C 106577 | Sbjct 280367 C 280367 >seq53 Length=2198565 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | |||||| | || ||||||||||| ||| ||| |||| || | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || |||||| || || |||||| | || ||| || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | || |||||||| || || || |||||||| | || | | || ||||| Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| |||||||| || ||||| | |||||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACG 1830972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428297640904940